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Pull requests: loculus-project/loculus

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Pull requests list

fix(backend): clarify duplicate ID errors backend related to the loculus backend component
#7309 opened Sep 11, 2026 by clonder Contributor Loading…
2 tasks done
1
5
Not to be merged: testing new file ids on preview deployment Code changes targetting the deployment infrastructure preview Triggers a deployment to argocd
#7306 opened Sep 10, 2026 by maverbiest Contributor • Draft
3 tasks
3
fix(website): Add Access control allow origin header for website file requests website Tasks related to the web application
#7304 opened Sep 10, 2026 by tombch Collaborator Loading…
3 tasks
16
experiment: refactor prepro datatypes deployment Code changes targetting the deployment infrastructure preprocessing Issues related to the preprocessing component
#7302 opened Sep 10, 2026 by maverbiest Contributor • Draft
3 tasks
2
feat(config): start using outputFileUrlType website on previews deployment Code changes targetting the deployment infrastructure preview Triggers a deployment to argocd
#7301 opened Sep 10, 2026 by anna-parker Contributor Loading…
4
refactor(website): refactor file mapping on submit to fix issues for CI and compressed metadata files website Tasks related to the web application
#7299 opened Sep 10, 2026 by tombch Collaborator • Draft
3 tasks
1
1
fix(deployment): increase time before LAPIS readiness probe fails to 1min from 30s deployment Code changes targetting the deployment infrastructure
#7298 opened Sep 10, 2026 by corneliusroemer-agent Collaborator Loading…
7
feat(raw-reads-processing): improve error message if user submits interleaved fastq files preview Triggers a deployment to argocd
#7297 opened Sep 10, 2026 by anna-parker Contributor Loading…
2 of 3 tasks
2
5
ci(ena-submission): add mypy type checking deposition related to ENA/INSDC deposition
#7292 opened Sep 9, 2026 by corneliusroemer-agent Collaborator • Draft
1 of 3 tasks
1
perf(ci): cache Playwright browsers in integration tests
#7286 opened Sep 9, 2026 by maverbiest Contributor • Draft
3 tasks
style(raw-reads): use the repo's 100-character line length
#7274 opened Sep 8, 2026 by corneliusroemer-agent Collaborator • Draft
ci(integration-tests): type-check in CI, and set a tsconfig target
#7273 opened Sep 8, 2026 by corneliusroemer-agent Collaborator Loading…
6
fix(kubernetes): make MinIO report its health and fail loudly on bucket setup deployment Code changes targetting the deployment infrastructure preview Triggers a deployment to argocd
#7272 opened Sep 8, 2026 by corneliusroemer-agent Collaborator Loading…
13
test(integration): retry the tooltip hover until react has hydrated
#7268 opened Sep 8, 2026 by corneliusroemer-agent Collaborator • Draft
test(integration): wait for uploads to complete, not for N checkmarks
#7267 opened Sep 8, 2026 by corneliusroemer-agent Collaborator Loading…
6
feat(raw-reads): reject files whose name and compression disagree format_me Triggers github_actions to format website code on PR
#7266 opened Sep 8, 2026 by corneliusroemer-agent Collaborator Loading…
18
fix(deposition): normalise raw-read file extensions to the validated set deposition related to ENA/INSDC deposition
#7265 opened Sep 8, 2026 by corneliusroemer-agent Collaborator Loading…
11
feat(deployment): reject config where metadata and file category names overlap deployment Code changes targetting the deployment infrastructure
#7264 opened Sep 8, 2026 by corneliusroemer-agent Collaborator • Draft
feat(website): [WIP] add Reference Comparison to sequence details preview Triggers a deployment to argocd website Tasks related to the web application
#7252 opened Sep 7, 2026 by theosanderson-agent Collaborator • Draft
fix(ingest): regroup revoke needs to work when number of sequences is greater than batch size, add tests ingest Ingest pipeline
#7249 opened Sep 7, 2026 by anna-parker Contributor Loading…
2 of 3 tasks
7
feat(backend): human-readable file ids backend related to the loculus backend component update_db_schema website Tasks related to the web application
#7242 opened Sep 4, 2026 by maverbiest Contributor Loading…
3 tasks done
1
31
feat(deployment): make backend jvm options configurable deployment Code changes targetting the deployment infrastructure
#7239 opened Sep 3, 2026 by clonder Contributor • Draft
2 tasks done
7
chore(deps): bump pandas from 2.3.3 to 3.0.5 in /ingest conda Pull requests that update conda code dependencies Pull requests that update a dependency file
#7212 opened Sep 1, 2026 by dependabot Bot Loading…
1
chore(kubernetes): update SILO 0.11.0 -> 0.13.3, LAPIS 0.8.0 -> 0.8.6 deployment Code changes targetting the deployment infrastructure
#7207 opened Sep 1, 2026 by fengelniederhammer Contributor • Draft
2 tasks done
1
6
feat(action): added chikV taxon id
#7204 opened Aug 30, 2026 by arthurshem86 Contributor Loading…
2 of 3 tasks
4
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