neoantigen

pTuneos: prioritizing Tumor neoantigen from next-generation sequencing data

A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)

Multi-Omics Peptide Generator

IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening

neoantigen depletion checking and detection

PREP: Prioritizing of RNA Editing-based Peptides

Calculate and explore property indices of peptides for cancer immunotherapy study

Neoantigen Discovery pipeline

Measuring peptide–MHC generalization to unseen alleles across both HLA classes — leakage-controlled benchmark + factorized predictor. Open 4.66M / research-use 5.8M measurements over 421 / 507 HLA alleles. Companion paper submitted to PLOS Computational Biology, 2026.

🧬 Canine neoantigen prioritization pipeline — from somatic variants to ranked vaccine candidates, purpose-built for dogs

Ultrafast MHC binding prediction. Immunogenicity scorer. Matching peptides and their mimics under MHC restriction

Leakage-aware, patient-level, reproducible benchmark resource for public MHC-I neoantigen predictors

HLA-A*02:01 nine-mer peptide binding prediction from sequence, with grouped validation and fully traceable metrics.

Reproducible pipeline integrating TCGA-LUAD somatic mutations with GEO RNA-seq expression to predict and prioritise candidate neoantigens

mRNA neoantigen vaccine design: epitope scanning and MHC binding prediction, fusion construct assembly, HBB UTR/Kozak/poly-A mRNA build, and IVT template generation