rice-systems / lofreq-fpga Star 8 Code Issues Pull requests FPGA Acceleration for the LoFreq variant caller bioinformatics fpga hls probability-distribution xilinx variant-calling bioinformatics-tool lofreq vitis-hls poisson-binomial-distribution counting-models Updated Oct 18, 2025 C
aleponce4 / viral-intrahost-variant-workflow Star 1 Code Issues Pull requests Containerized Nextflow DSL2 workflow for viral intra-host variant calling (iSNV), quasispecies haplotype reconstruction, and evolutionary selection analysis. bioinformatics nextflow quasispecies variant-calling viral-genomics ivar nextflow-dsl2 lofreq Updated Aug 26, 2026 Python
alvarolva / SIAV-VariantFlow Star 0 Code Issues Pull requests Reproducible workflow for low-frequency intrahost variant analysis of swine influenza A virus from Illumina sequencing data. bioinformatics genomics reproducible-research variant-calling influenza viral-genomics snpeff lofreq influenza-a-virus swine-influenza intrahost-variation Updated Aug 16, 2026 Shell