Cell Intake Analysis

Calculate cells protein intake by measuring the fluorescence signal from the antibody targetting respective proteins.

The development of this project has stopped. The function of this project would be later included in DiffractionLimitedAnalysis.

Requirements

• Python 3 (tested with Python 3.6-3.9)

  • os
  • subprocess
  • tifffile
  • skimage
  • pandas
  • numpy

• Fiji(is just imagej)

  • Trainable Weka Segmentation

Sample model trained can be downloaded from GoogleDrive-CellIntakeAnalysis_SampleModel.