CMSFFPE

A CMS classifier for formalin-fixed paraffin-embeded colorectal cancer tissue

installation

devtools::install_github("yswutan/CMSFFPE")

usage

library(CMSFFPE); library(randomForest); library(caret)

labels <- CMSFFPEClassifier(Expr = Expr, minPosterior = 0.5, log2transfrom=FALSE)