Name		Name	Last commit message	Last commit date
MrcImagePlugin.py		MrcImagePlugin.py
README.md		README.md
addback.pl		addback.pl
addtilts.pl		addtilts.pl
alignframes.pl		alignframes.pl
aniso_dist_correct.pl		aniso_dist_correct.pl
archive_ddstack.pl		archive_ddstack.pl
auto_ctffind4.pl		auto_ctffind4.pl
autorelauncher.pl		autorelauncher.pl
back_calc_intensity.pl		back_calc_intensity.pl
bfactor_movingavg.pl		bfactor_movingavg.pl
box2star.pl		box2star.pl
calcdose.pl		calcdose.pl
check-copy.pl		check-copy.pl
check_particles_are_far_enough_apart_v2.py		check_particles_are_far_enough_apart_v2.py
check_warp_copy.pl		check_warp_copy.pl
checkpow.pl		checkpow.pl
checkuse.pl		checkuse.pl
circle.py		circle.py
combine_df_is.pl		combine_df_is.pl
copydata.pl		copydata.pl
copydata_auto.pl		copydata_auto.pl
copyfake.pl		copyfake.pl
count_holes.py		count_holes.py
count_images.pl		count_images.pl
ctf_flip.py		ctf_flip.py
del_duplicates_star.pl		del_duplicates_star.pl
delbad.pl		delbad.pl
deldups.pl		deldups.pl
df_differences.pl		df_differences.pl
df_histo.pl		df_histo.pl
diff_histo.pl		diff_histo.pl
editstarpath.pl		editstarpath.pl
elim_ctf.pl		elim_ctf.pl
eliminate_bad.pl		eliminate_bad.pl
eliminate_islands.pl		eliminate_islands.pl
exemplar_particles.pl		exemplar_particles.pl
extract.pl		extract.pl
extract_coords.pl		extract_coords.pl
filter_gctf_star.pl		filter_gctf_star.pl
filterpreali.pl		filterpreali.pl
find_movie_box.pl		find_movie_box.pl
find_mrc_box.pl		find_mrc_box.pl
findbadctf.pl		findbadctf.pl
finddqe.pl		finddqe.pl
fix_coords.pl		fix_coords.pl
fix_filenames_cryosparc.pl		fix_filenames_cryosparc.pl
flipstarcoords.pl		flipstarcoords.pl
get_coords_relion2.pl		get_coords_relion2.pl
getnums.pl		getnums.pl
getnumsbeer.pl		getnumsbeer.pl
hdf_to_mrc.pl		hdf_to_mrc.pl
hide_bad_sessions.pl		hide_bad_sessions.pl
hl_finding.sh		hl_finding.sh
hl_finding2.sh		hl_finding2.sh
hl_making.sh		hl_making.sh
holewatcher.py		holewatcher.py
ice_thick_tilt.pl		ice_thick_tilt.pl
ice_thickness.py		ice_thickness.py
ice_thickness_als.py		ice_thickness_als.py
ice_thickness_beer.py		ice_thickness_beer.py
ice_thickness_kk.py		ice_thickness_kk.py
imod_to_protomo_coarse.pl		imod_to_protomo_coarse.pl
import.pl		import.pl
interleave.pl		interleave.pl
invert.pl		invert.pl
is_df_slope.py		is_df_slope.py
isac_to_list.py		isac_to_list.py
isac_to_star.py		isac_to_star.py
jsontostar.py		jsontostar.py
list.txt		list.txt
make_links_fixdel.pl		make_links_fixdel.pl
make_movie.pl		make_movie.pl
make_movie_subset.csh		make_movie_subset.csh
make_picks.pl		make_picks.pl
make_thumbnails.pl		make_thumbnails.pl
make_thumbnails_all.pl		make_thumbnails_all.pl
make_thumbnails_other.pl		make_thumbnails_other.pl
makebars.pl		makebars.pl
makelink_relion_names.pl		makelink_relion_names.pl
makelinks.pl		makelinks.pl
makesmallset.pl		makesmallset.pl
makestar.pl		makestar.pl
makestar_ctf.pl		makestar_ctf.pl
makestar_ctf_thick.pl		makestar_ctf_thick.pl
makestar_ctf_thick_appion.pl		makestar_ctf_thick_appion.pl
motioncor2.py		motioncor2.py
movebad.pl		movebad.pl
moveit.pl		moveit.pl
mrc2jpg_withscale.py		mrc2jpg_withscale.py
optics_group.pl		optics_group.pl
particles_by_micrograph.pl		particles_by_micrograph.pl
perl_mean_sd.pl		perl_mean_sd.pl
plot_bfactors.com		plot_bfactors.com
plot_class3d.pl		plot_class3d.pl
plot_class3d_RELION2.0.pl		plot_class3d_RELION2.0.pl
plot_guiniers.pl		plot_guiniers.pl
plot_refine3d.pl		plot_refine3d.pl
pos_thickness.pl		pos_thickness.pl
powerthick.pl		powerthick.pl

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small cryoEM scripts

various scripts for use in cryo-em image processing

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various scripts for use in cryo-em image processing

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