GAF sorting improvements - #5024
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Changelog Entry
To be copied to the draft changelog by merger:
vg gamsortsorts GAF by GBWT node id intervals for better compatibility with GAF-base.vg gamsortoption--two-merge-roundsto guarantee at most two rounds of merges when sorting GAF.Description
Some small improvements to GAF sorting with
vg gamsort. Sorting is now done by GBWT (oriented) node id intervals rather than vg (unoriented) node id intervals to meet the expectations of GAF-base. There is also option--two-merge-roundsthat increases the merge width when necessary to guarantee at most two merge rounds.