Quantitative metagenomic alignment and taxonomic exact-matching
Protal is tool for taxonomic profiling from whole-genome shotgun sequencing data. With GTDB marker genes as reference, protal is able to cover most described bacteria. Protal is further able to disentangle intraspecific variation across samples.
An automated Anvi'o v9 Snakemake workflow for competitive metagenomic read recruitment. Resolves conserved sequence homologies to enable strain-level taxonomic profiling, population-level abundance estimation, and genome detection limits across environmental samples.
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