This repository contains code for reproducing results in our paper Interpreting Potts and Transformer Protein Models Through the Lens of Simplified Attention

Variant effect prediction for SLC22A5 transporter gene using Potts models

Simulation of POTTS model for square lattice with three Monte Carlo methods

7. Stohastički procesi HMM, HSMM, Markov random field, Ising, Potts, Hawkes process, Poisson process, renewal process, state-space models (kalman kao struktura dinamike)