cg/wgMLST allele calling software, schema evaluation and allele distance estimation for outbreak reserch.
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Jan 3, 2025 - Jupyter Notebook
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outbreak-data-analysis
Here are 12 public repositories matching this topic...
CoronoVirus (COVID-19) Outbreak data analysis, visualization and prediction
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Mar 5, 2021 - Jupyter Notebook
This repository highlights course work completed during Population Health Informatics course in Spring 2025. It is a comprehensive part of final project submission.
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Apr 17, 2025 - Jupyter Notebook
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Jan 28, 2024 - Python
The data repository for the study: "Identifying spatial super-spreader and spatial super susceptible locations from human movement networks"
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May 8, 2020
Stochastic Outbreak Learning and Variance-Aware Regression (SOLVAR) is an adaptive ensemble of ML and endemic-epidemic experts for probabilistic, MDRO-specific outbreak early warning, designed for infection control teams using hospital microbiology data.
machine-learning machine-learning-algorithms microbiology outbreak-detection outbreak infection-control outbreak-data-analysis outbreak-analysis mdro outbreak-surveillance infection-prevention endemic-epidemic
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Aug 1, 2026 - Python
Exploratory data analysis on Covid-19 data using R and its libraries.
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Feb 22, 2021 - Jupyter Notebook
covid-19 related study on Veneto region
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Jan 26, 2022 - HTML
Gallery for GEViT Project
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Jan 14, 2020 - HTML
Documentation related to the project "Quantifying the Impact of Data Sharing on Outbreak Dynamics" (QIDSOD)
documentation data-science public-health data-integration epidemiology data-sharing datasharing outbreak outbreaks epidemiological-investigation covid-19 covid19 sars-cov-2 sarscov2 outbreak-severity outbreak-data-analysis next-pandemic outbreak-dynamics
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Jul 7, 2021
LDA topic modelling of WHO Disease Outbreak News
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Sep 30, 2021 - Python
Software development at ForeSITE
research simulation abm scientific-computing epidemiology r-package covid-19 outbreak-data-analysis reproduction-number
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Sep 10, 2026 - R
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