nfdi4bioimage

A plugin for exporting RDF from OMERO

OMERO.web plugin for the Vitessce multimodal data viewer.

Illustrations were contracted by the Heinrich Heine University of Düsseldorf in the frame of the consortium NFDI4BIOIMAGE from Henning Falk for the purpose of education and public outreach (CC-BY)

Linking Electronic Lab Notebooks and other sources with OMERO objects

Linked Data support for the OME Model

A plugin module inside 3D Slicer to open your 3D NRRD images stored in OMERO.

A versatile data collection tool for multi-modal scientific studies.

firefox extension: reads datamatrix code from camera and create a sample in an inventory to link it into an ELN.

Bash Script for automatic import of Image files into OMERO, works as support for https://github.com/ThZobel/MetaFold

SPARNatural customizations for MPI EvolBio

This tool is designed to synchronize the entries in a four-tool system, which includes a - project registration system (eGroupware), - an electronic lab book (Rspace), - an image database (OMERO), - a long-term netstorage system (LINstore)

Linking Electronic Lab Notebooks with OMERO objects

use your research data to create tags and structured metadata files and add them to omero or sidecar files

Fork of a working volgenmodel (check the other forks) as a docker version to preserve the pipeline.

This repository hosts a prototype tool designed to analyze and aggregate FAIR (Findable, Accessible, Interoperable, and Reusable) statistics for a list of Digital Object Identifiers (DOIs).

The Bioimaging Data Management Workflow for Plasma Medicine supports research data management for bioimaging in plasma medicine research. It is provided as an executable Jupyter notebook including step-by-step instructions.

PROOF-OF-CONCEPT: code snippet to upscale an 3D annotation file to TB size independed of working memory

NFDI4BIOIMAGE data management illustrations by Henning Falk (2024)

A module to read OME-Zarr data from S3 storage into 3D Slicer.