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dnabert2

Here are 2 public repositories matching this topic...

naimurhamim / GenomeIQ-A-DNA-disease-classifier-ai

🧬 GenomeIQ — Explainable AI for DNA disease classification. Predicts Cancer, Diabetes, Alzheimer's, or Normal markers from raw DNA sequences using TF-IDF k-mer ensemble + fine-tuned DNABERT-2 transformer. Features saliency maps, OOD detection, BLAST-lite similarity, mutation analysis, and a Gemini-powered RAG copilot.

machine-learning bioinformatics deep-learning genomics transformers disease-classification explainable-ai dnabert2

Updated May 26, 2026
Python

dnabert2-colorectal-enhancers

darren-king / dnabert2-colorectal-enhancers

Fine-tuning DNABERT-2 to classify normal vs tumour colorectal gene enhancers from DNA sequence alone (MSc thesis). PR-AUC 0.758 · arXiv:2509.25274

machine-learning bioinformatics deep-learning genomics scikit-learn transformers computational-biology pytorch enhancers optuna dna-sequence hugging-face colorectal-cancer genomic-language-model dnabert2

Updated Jul 24, 2026
Jupyter Notebook

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