B-UMMI / chewBBACA Star 150 Code Issues Pull requests Discussions BSR-Based Allele Calling Algorithm bioinformatics genomics mlst bacteria cgmlst outbreak-detection wgmlst bacterial-genome-analysis allele-calling bacterial-typing Updated Sep 9, 2026 HTML
liora-bioinformatics / PhyloTrace Star 10 Code Issues Pull requests Discussions PhyloTrace is a GUI platform for bacterial monitoring offering a toolkit of analyses like hashed cgMLST typing and Antimicrobial Resistance Screening. phylogenetic-trees epidemiology genetic-analysis infectious-diseases cgmlst bacterial-genomes antimicrobial-resistance allele-calling bacterial-typing Updated Sep 9, 2026 R
jimmyliu1326 / SamnSero_Nextflow Star 7 Code Issues Pull requests Bacterial Genomics Workflow for Infectious Disease Diagnostics and Surveillance bioinformatics nextflow microbial-genomics infectious-diseases bacterial-typing Updated Aug 10, 2026 HTML
cinnetcrash / Lgarvieae-cgMLST Star 0 Code Issues Pull requests Core genome MLST schema for Lactococcus garvieae (chewBBACA-compatible, 1100 loci, built from 247 QC'd genomes) mlst cgmlst aquaculture genomic-epidemiology chewbbaca bacterial-typing lactococcus-garvieae Updated Aug 3, 2026 HTML