The Long Lab
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- Apollo Public
A comprehensive simulator for exploring the dynamics of viral transmission complete with within host evolution.
- CATE Public
A fast and scalable CUDA implementation to conduct highly parallelized evolutionary tests and viral simulations at scale. Related manuscripts: https://doi.org/10.1111/2041-210X.14168 and https://doi.org/10.1038/s41467-025-60988-8
- Transfer-Learning Public
- moka Public Forked from davidenoma/moka
MOKA Snakemake pipeline for GWAS incorporating user provided multi-omics data sources such as gene expression, neural network weights, transcription factor binding, and evolutionary conservation scores.
- Kernel_smoothed_permutation Public
Kernel-smoothed permutation is a method that constructs the null distribution of a test statistic through a novel kurtosis-driven Box-Cox transformation, followed by a kernel- based density estimation (KDE).
- AE-TWAS Public
- transTF-TWAS Public
- Jawamix5 Public
- TF-TWAS Public
- IMAS Public
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