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Merge pull request #1992 from stuart-lab/linkpeaks_update
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Update LinkPeaks
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Update tests for LinkPeaks
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Remove SeuratDisk, SeuratData
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Remove seurat disk
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Remove cluster renaming
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ChromVAR
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check for missing motifs
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Avoid overwriting metadata in ATACqc; #1993
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Fix default for Seurat method
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add FindCandidateLinks; mod LinkPeaks; mod CollapseToLongestTranscript
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Merge branch 'v2' of github.com:stuart-lab/signac into v2
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Ensure matching cells
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Expand test coverage
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Fix RegionAggregation
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Fix RegionStats when missing chromosomes present
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fix fragment file index detection
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add heatmap test
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