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Merged
iamzoltan merged 4 commits into from
Jul 17, 2026
Merged

Notebook install guards #514

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b468706
Merge pull request #510 from neuromatch/staging
iamzoltan May 25, 2026
70ae7da
Add guarded notebook install cells skip ci
OleBialas Jul 2, 2026
9054ce3
Restore notebook metadata around install guards skip ci
OleBialas Jul 2, 2026
25afa01
Keep install guards in existing notebook cells skip ci
OleBialas Jul 2, 2026
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9 changes: 7 additions & 2 deletions projects/project-notebooks/ComparingNetworks.ipynb
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Expand Up @@ -61,7 +61,9 @@
"source": [
"# @title Install and import feedback gadget\n",
"\n",
"!pip install vibecheck datatops --quiet\n",
"from os import environ as env\n",
"if any(var in env for var in [\"COLAB_RELEASE_TAG\", \"KAGGLE_KERNEL_RUN_TYPE\"]):\n",
" %pip install vibecheck datatops --quiet\n",
"\n",
"from vibecheck import DatatopsContentReviewContainer\n",
"def content_review(notebook_section: str):\n",
Expand Down Expand Up @@ -478,7 +480,10 @@
" if not os.path.isdir(dirname):\n",
" ! git clone https://github.com/neuromatch/ComputationThruDynamicsBenchmark\n",
" %cd ComputationThruDynamicsBenchmark\n",
" ! pip install -e .\n",
"\n",
"from os import environ as env\n",
"if any(var in env for var in [\"COLAB_RELEASE_TAG\", \"KAGGLE_KERNEL_RUN_TYPE\"]):\n",
" %pip install -e .\n",
"\n",
"envStr = \"\"\"HOME_DIR=ComputationThruDynamicsBenchmark/\n",
"\n",
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4 changes: 3 additions & 1 deletion projects/project-notebooks/Macrocircuits.ipynb
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Expand Up @@ -62,7 +62,9 @@
"source": [
"# @title Install and import feedback gadget\n",
"\n",
"!pip install vibecheck datatops --quiet\n",
"from os import environ as env\n",
"if any(var in env for var in [\"COLAB_RELEASE_TAG\", \"KAGGLE_KERNEL_RUN_TYPE\"]):\n",
" %pip install vibecheck datatops --quiet\n",
"\n",
"from vibecheck import DatatopsContentReviewContainer\n",
"def content_review(notebook_section: str):\n",
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4 changes: 3 additions & 1 deletion projects/project-notebooks/Microlearning.ipynb
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Expand Up @@ -64,7 +64,9 @@
"source": [
"# @title Install and import feedback gadget\n",
"\n",
"!pip install vibecheck datatops --quiet\n",
"from os import environ as env\n",
"if any(var in env for var in [\"COLAB_RELEASE_TAG\", \"KAGGLE_KERNEL_RUN_TYPE\"]):\n",
" %pip install vibecheck datatops --quiet\n",
"\n",
"from vibecheck import DatatopsContentReviewContainer\n",
"def content_review(notebook_section: str):\n",
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5 changes: 4 additions & 1 deletion tutorials/Bonus_BonusContent/Bonus_Tutorial2.ipynb
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Expand Up @@ -79,7 +79,10 @@
"outputs": [],
"source": [
"# @title Install dependecies\n",
"!pip install plotly --quiet"
"\n",
"from os import environ as env\n",
"if any(var in env for var in [\"COLAB_RELEASE_TAG\", \"KAGGLE_KERNEL_RUN_TYPE\"]):\n",
" %pip install plotly --quiet"
]
},
{
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4 changes: 3 additions & 1 deletion tutorials/W1D1_Generalization/W1D1_Intro.ipynb
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Expand Up @@ -33,7 +33,9 @@
"source": [
"# @title Install and import feedback gadget\n",
"\n",
"!pip install vibecheck datatops --quiet\n",
"from os import environ as env\n",
"if any(var in env for var in [\"COLAB_RELEASE_TAG\", \"KAGGLE_KERNEL_RUN_TYPE\"]):\n",
" %pip install vibecheck datatops --quiet\n",
"\n",
"from vibecheck import DatatopsContentReviewContainer\n",
"def content_review(notebook_section: str):\n",
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4 changes: 3 additions & 1 deletion tutorials/W1D1_Generalization/W1D1_Tutorial1.ipynb
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Expand Up @@ -126,7 +126,9 @@
"source": [
"# @title Install and import feedback gadget\n",
"\n",
"!pip install vibecheck Pillow matplotlib torch torchvision transformers gradio protobuf sentencepiece gradio torchmetrics --quiet\n",
"from os import environ as env\n",
"if any(var in env for var in [\"COLAB_RELEASE_TAG\", \"KAGGLE_KERNEL_RUN_TYPE\"]):\n",
" %pip install vibecheck Pillow matplotlib torch torchvision transformers gradio protobuf sentencepiece gradio torchmetrics --quiet\n",
"\n",
"from vibecheck import DatatopsContentReviewContainer\n",
"def content_review(notebook_section: str):\n",
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4 changes: 3 additions & 1 deletion tutorials/W1D1_Generalization/W1D1_Tutorial2.ipynb
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Expand Up @@ -106,7 +106,9 @@
"source": [
"# @title Install and import feedback gadget\n",
"\n",
"!pip install numpy scipy matplotlib torch tqdm vibecheck --quiet\n",
"from os import environ as env\n",
"if any(var in env for var in [\"COLAB_RELEASE_TAG\", \"KAGGLE_KERNEL_RUN_TYPE\"]):\n",
" %pip install numpy scipy matplotlib torch tqdm vibecheck --quiet\n",
"\n",
"from vibecheck import DatatopsContentReviewContainer\n",
"def content_review(notebook_section: str):\n",
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4 changes: 3 additions & 1 deletion tutorials/W1D1_Generalization/W1D1_Tutorial3.ipynb
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Expand Up @@ -106,7 +106,9 @@
"source": [
"# @title Install and import feedback gadget\n",
"\n",
"!pip install matplotlib numpy Pillow scipy ipywidgets vibecheck tqdm --quiet\n",
"from os import environ as env\n",
"if any(var in env for var in [\"COLAB_RELEASE_TAG\", \"KAGGLE_KERNEL_RUN_TYPE\"]):\n",
" %pip install matplotlib numpy Pillow scipy ipywidgets vibecheck tqdm --quiet\n",
"\n",
"from vibecheck import DatatopsContentReviewContainer\n",
"def content_review(notebook_section: str):\n",
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5 changes: 3 additions & 2 deletions tutorials/W1D2_ComparingTasks/W1D2_Tutorial1.ipynb
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Expand Up @@ -124,8 +124,9 @@
"source": [
"# @title Install and import feedback gadget\n",
"\n",
"!pip install vibecheck numpy matplotlib torch torchvision tqdm ipywidgets memory-profiler requests scikit-learn torchmetrics --quiet\n",
"\n",
"from os import environ as env\n",
"if any(var in env for var in [\"COLAB_RELEASE_TAG\", \"KAGGLE_KERNEL_RUN_TYPE\"]):\n",
" %pip install vibecheck numpy matplotlib torch torchvision tqdm ipywidgets memory-profiler requests scikit-learn torchmetrics --quiet\n",
"\n",
"from vibecheck import DatatopsContentReviewContainer\n",
"def content_review(notebook_section: str):\n",
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4 changes: 3 additions & 1 deletion tutorials/W1D2_ComparingTasks/W1D2_Tutorial2.ipynb
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Expand Up @@ -116,7 +116,9 @@
"source": [
"# @title Install and import feedback gadget\n",
"\n",
"!pip install vibecheck numpy matplotlib torch torchvision tqdm ipysankeywidget ipywidgets seaborn --quiet\n",
"from os import environ as env\n",
"if any(var in env for var in [\"COLAB_RELEASE_TAG\", \"KAGGLE_KERNEL_RUN_TYPE\"]):\n",
" %pip install vibecheck numpy matplotlib torch torchvision tqdm ipysankeywidget ipywidgets seaborn --quiet\n",
"\n",
"from vibecheck import DatatopsContentReviewContainer\n",
"def content_review(notebook_section: str):\n",
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4 changes: 3 additions & 1 deletion tutorials/W1D2_ComparingTasks/W1D2_Tutorial3.ipynb
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Expand Up @@ -135,7 +135,9 @@
"source": [
"# @title Install and import feedback gadget\n",
"\n",
"!pip install vibecheck requests matplotlib ipython numpy scipy --quiet\n",
"from os import environ as env\n",
"if any(var in env for var in [\"COLAB_RELEASE_TAG\", \"KAGGLE_KERNEL_RUN_TYPE\"]):\n",
" %pip install vibecheck requests matplotlib ipython numpy scipy --quiet\n",
"\n",
"from vibecheck import DatatopsContentReviewContainer\n",
"def content_review(notebook_section: str):\n",
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4 changes: 3 additions & 1 deletion tutorials/W1D3_ComparingArtificialAndBiologicalNetworks/W1D3_Intro.ipynb
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Expand Up @@ -33,7 +33,9 @@
"source": [
"# @title Install and import feedback gadget\n",
"\n",
"!pip install vibecheck datatops --quiet\n",
"from os import environ as env\n",
"if any(var in env for var in [\"COLAB_RELEASE_TAG\", \"KAGGLE_KERNEL_RUN_TYPE\"]):\n",
" %pip install vibecheck datatops --quiet\n",
"\n",
"from vibecheck import DatatopsContentReviewContainer\n",
"def content_review(notebook_section: str):\n",
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19 changes: 13 additions & 6 deletions tutorials/W1D3_ComparingArtificialAndBiologicalNetworks/W1D3_Tutorial1.ipynb
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Expand Up @@ -124,13 +124,18 @@
"source": [
"# @title Install dependencies\n",
"\n",
"!pip install -q ipympl ipywidgets mpl_interactions[\"jupyter\"] torchlens\n",
"!pip install -q graphviz\n",
"!pip install rsatoolbox==0.1.5\n",
"from os import environ as env\n",
"if any(var in env for var in [\"COLAB_RELEASE_TAG\", \"KAGGLE_KERNEL_RUN_TYPE\"]):\n",
" %pip install -q ipympl ipywidgets mpl_interactions[\"jupyter\"] torchlens\n",
" %pip install -q graphviz\n",
" %pip install rsatoolbox==0.1.5\n",
"\n",
"# To install jupyter-matplotlib (ipympl) via pip\n",
"!pip install -q torchlens\n",
"!pip install -q numpy scikit-learn torch torchvision scipy matplotlib\n",
"\n",
"from os import environ as env\n",
"if any(var in env for var in [\"COLAB_RELEASE_TAG\", \"KAGGLE_KERNEL_RUN_TYPE\"]):\n",
" %pip install -q torchlens\n",
" %pip install -q numpy scikit-learn torch torchvision scipy matplotlib\n",
"\n",
"# Import future dependencies first\n",
"from __future__ import print_function\n",
Expand Down Expand Up @@ -169,7 +174,9 @@
"source": [
"# @title Install and import feedback gadget\n",
"\n",
"!pip install vibecheck datatops --quiet\n",
"from os import environ as env\n",
"if any(var in env for var in [\"COLAB_RELEASE_TAG\", \"KAGGLE_KERNEL_RUN_TYPE\"]):\n",
" %pip install vibecheck datatops --quiet\n",
"\n",
"from vibecheck import DatatopsContentReviewContainer\n",
"def content_review(notebook_section: str):\n",
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6 changes: 4 additions & 2 deletions tutorials/W1D3_ComparingArtificialAndBiologicalNetworks/W1D3_Tutorial2.ipynb
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Expand Up @@ -90,8 +90,10 @@
"source": [
"# @title Install and import feedback gadget\n",
"\n",
"!pip install torch torchvision matplotlib numpy scikit-learn scipy vibecheck --quiet\n",
"!pip install rsatoolbox==0.1.5 --quiet\n",
"from os import environ as env\n",
"if any(var in env for var in [\"COLAB_RELEASE_TAG\", \"KAGGLE_KERNEL_RUN_TYPE\"]):\n",
" %pip install torch torchvision matplotlib numpy scikit-learn scipy vibecheck --quiet\n",
" %pip install rsatoolbox==0.1.5 --quiet\n",
"\n",
"from vibecheck import DatatopsContentReviewContainer\n",
"def content_review(notebook_section: str):\n",
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7 changes: 4 additions & 3 deletions tutorials/W1D3_ComparingArtificialAndBiologicalNetworks/W1D3_Tutorial3.ipynb
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Expand Up @@ -102,9 +102,10 @@
"source": [
"# @title Install and import feedback gadget\n",
"\n",
"!pip install numpy pandas torch torchvision matplotlib ipython Pillow plotly networkx requests vibecheck --quiet\n",
"!pip install rsatoolbox==0.1.5 --quiet\n",
"\n",
"from os import environ as env\n",
"if any(var in env for var in [\"COLAB_RELEASE_TAG\", \"KAGGLE_KERNEL_RUN_TYPE\"]):\n",
" %pip install numpy pandas torch torchvision matplotlib ipython Pillow plotly networkx requests vibecheck --quiet\n",
" %pip install rsatoolbox==0.1.5 --quiet\n",
"\n",
"from vibecheck import DatatopsContentReviewContainer\n",
"def content_review(notebook_section: str):\n",
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6 changes: 4 additions & 2 deletions tutorials/W1D3_ComparingArtificialAndBiologicalNetworks/W1D3_Tutorial4.ipynb
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Expand Up @@ -112,8 +112,10 @@
"source": [
"# @title Install dependencies and import feedback gadget\n",
"\n",
"!pip install numpy xarray scipy scikit-learn matplotlib seaborn tqdm vibecheck datatops --quiet\n",
"!pip install rsatoolbox==0.1.5 --quiet\n",
"from os import environ as env\n",
"if any(var in env for var in [\"COLAB_RELEASE_TAG\", \"KAGGLE_KERNEL_RUN_TYPE\"]):\n",
" %pip install numpy xarray scipy scikit-learn matplotlib seaborn tqdm vibecheck datatops --quiet\n",
" %pip install rsatoolbox==0.1.5 --quiet\n",
"\n",
"from vibecheck import DatatopsContentReviewContainer\n",
"def content_review(notebook_section: str):\n",
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4 changes: 3 additions & 1 deletion tutorials/W1D3_ComparingArtificialAndBiologicalNetworks/W1D3_Tutorial5.ipynb
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Expand Up @@ -52,7 +52,9 @@
"source": [
"# @title Install and import feedback gadget\n",
"\n",
"!pip install vibecheck rsatoolbox --quiet\n",
"from os import environ as env\n",
"if any(var in env for var in [\"COLAB_RELEASE_TAG\", \"KAGGLE_KERNEL_RUN_TYPE\"]):\n",
" %pip install vibecheck rsatoolbox --quiet\n",
"\n",
"from vibecheck import DatatopsContentReviewContainer\n",
"def content_review(notebook_section: str):\n",
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4 changes: 3 additions & 1 deletion tutorials/W1D5_Microcircuits/W1D5_Intro.ipynb
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Expand Up @@ -38,7 +38,9 @@
"source": [
"# @title Install and import feedback gadget\n",
"\n",
"!pip install vibecheck datatops --quiet\n",
"from os import environ as env\n",
"if any(var in env for var in [\"COLAB_RELEASE_TAG\", \"KAGGLE_KERNEL_RUN_TYPE\"]):\n",
" %pip install vibecheck datatops --quiet\n",
"\n",
"from vibecheck import DatatopsContentReviewContainer\n",
"def content_review(notebook_section: str):\n",
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4 changes: 3 additions & 1 deletion tutorials/W1D5_Microcircuits/W1D5_Tutorial1.ipynb
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Expand Up @@ -87,7 +87,9 @@
"source": [
"# @title Install and import feedback gadget\n",
"\n",
"!pip install vibecheck datatops --quiet\n",
"from os import environ as env\n",
"if any(var in env for var in [\"COLAB_RELEASE_TAG\", \"KAGGLE_KERNEL_RUN_TYPE\"]):\n",
" %pip install vibecheck datatops --quiet\n",
"\n",
"from vibecheck import DatatopsContentReviewContainer\n",
"def content_review(notebook_section: str):\n",
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4 changes: 3 additions & 1 deletion tutorials/W1D5_Microcircuits/W1D5_Tutorial2.ipynb
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Expand Up @@ -91,7 +91,9 @@
"source": [
"# @title Install and import feedback gadget\n",
"\n",
"!pip install vibecheck datatops --quiet\n",
"from os import environ as env\n",
"if any(var in env for var in [\"COLAB_RELEASE_TAG\", \"KAGGLE_KERNEL_RUN_TYPE\"]):\n",
" %pip install vibecheck datatops --quiet\n",
"\n",
"from vibecheck import DatatopsContentReviewContainer\n",
"def content_review(notebook_section: str):\n",
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4 changes: 3 additions & 1 deletion tutorials/W1D5_Microcircuits/W1D5_Tutorial3.ipynb
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Expand Up @@ -109,7 +109,9 @@
"source": [
"# @title Install and import feedback gadget\n",
"\n",
"!pip install vibecheck datatops --quiet\n",
"from os import environ as env\n",
"if any(var in env for var in [\"COLAB_RELEASE_TAG\", \"KAGGLE_KERNEL_RUN_TYPE\"]):\n",
" %pip install vibecheck datatops --quiet\n",
"\n",
"from vibecheck import DatatopsContentReviewContainer\n",
"def content_review(notebook_section: str):\n",
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4 changes: 3 additions & 1 deletion tutorials/W2D1_Macrocircuits/W2D1_Intro.ipynb
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Expand Up @@ -32,7 +32,9 @@
"source": [
"# @title Install and import feedback gadget\n",
"\n",
"!pip install vibecheck datatops --quiet\n",
"from os import environ as env\n",
"if any(var in env for var in [\"COLAB_RELEASE_TAG\", \"KAGGLE_KERNEL_RUN_TYPE\"]):\n",
" %pip install vibecheck datatops --quiet\n",
"\n",
"from vibecheck import DatatopsContentReviewContainer\n",
"def content_review(notebook_section: str):\n",
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4 changes: 3 additions & 1 deletion tutorials/W2D1_Macrocircuits/W2D1_Tutorial1.ipynb
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Expand Up @@ -94,7 +94,9 @@
"source": [
"# @title Install and import feedback gadget\n",
"\n",
"!pip install vibecheck datatops --quiet\n",
"from os import environ as env\n",
"if any(var in env for var in [\"COLAB_RELEASE_TAG\", \"KAGGLE_KERNEL_RUN_TYPE\"]):\n",
" %pip install vibecheck datatops --quiet\n",
"\n",
"from vibecheck import DatatopsContentReviewContainer\n",
"def content_review(notebook_section: str):\n",
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4 changes: 3 additions & 1 deletion tutorials/W2D1_Macrocircuits/W2D1_Tutorial2.ipynb
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Expand Up @@ -95,7 +95,9 @@
"source": [
"# @title Install and import feedback gadget\n",
"\n",
"!pip install vibecheck datatops --quiet\n",
"from os import environ as env\n",
"if any(var in env for var in [\"COLAB_RELEASE_TAG\", \"KAGGLE_KERNEL_RUN_TYPE\"]):\n",
" %pip install vibecheck datatops --quiet\n",
"\n",
"from vibecheck import DatatopsContentReviewContainer\n",
"def content_review(notebook_section: str):\n",
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8 changes: 5 additions & 3 deletions tutorials/W2D1_Macrocircuits/W2D1_Tutorial3.ipynb
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Expand Up @@ -95,9 +95,11 @@
"source": [
"# @title Install and import feedback gadget\n",
"\n",
"!pip install vibecheck datatops --quiet\n",
"!pip install pandas --quiet\n",
"!pip install scikit-learn --quiet\n",
"from os import environ as env\n",
"if any(var in env for var in [\"COLAB_RELEASE_TAG\", \"KAGGLE_KERNEL_RUN_TYPE\"]):\n",
" %pip install vibecheck datatops --quiet\n",
" %pip install pandas --quiet\n",
" %pip install scikit-learn --quiet\n",
"\n",
"from vibecheck import DatatopsContentReviewContainer\n",
"def content_review(notebook_section: str):\n",
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4 changes: 3 additions & 1 deletion tutorials/W2D2_NeuroSymbolicMethods/W2D2_Intro.ipynb
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Expand Up @@ -34,7 +34,9 @@
"source": [
"# @title Install and import feedback gadget\n",
"\n",
"!pip install vibecheck datatops --quiet\n",
"from os import environ as env\n",
"if any(var in env for var in [\"COLAB_RELEASE_TAG\", \"KAGGLE_KERNEL_RUN_TYPE\"]):\n",
" %pip install vibecheck datatops --quiet\n",
"\n",
"from vibecheck import DatatopsContentReviewContainer\n",
"def content_review(notebook_section: str):\n",
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10 changes: 6 additions & 4 deletions tutorials/W2D2_NeuroSymbolicMethods/W2D2_Tutorial1.ipynb
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Expand Up @@ -91,10 +91,12 @@
"source": [
"# @title Install and import feedback gadget\n",
"\n",
"!pip install git+https://github.com/neuromatch/sspspace@neuromatch --quiet\n",
"!pip install numpy==1.24.4\n",
"!pip install nengo_spa==2.0.0\n",
"!pip install --quiet matplotlib ipywidgets scipy vibecheck\n",
"from os import environ as env\n",
"if any(var in env for var in [\"COLAB_RELEASE_TAG\", \"KAGGLE_KERNEL_RUN_TYPE\"]):\n",
" %pip install git+https://github.com/neuromatch/sspspace@neuromatch --quiet\n",
" %pip install numpy==1.24.4\n",
" %pip install nengo_spa==2.0.0\n",
" %pip install --quiet matplotlib ipywidgets scipy vibecheck\n",
"\n",
"from vibecheck import DatatopsContentReviewContainer\n",
"def content_review(notebook_section: str):\n",
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16 changes: 9 additions & 7 deletions tutorials/W2D2_NeuroSymbolicMethods/W2D2_Tutorial2.ipynb
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Expand Up @@ -91,13 +91,15 @@
"source": [
"# @title Install dependencies\n",
"\n",
"!pip install numpy==1.24.4 --quiet\n",
"!pip install scikit-learn==1.6.1 --quiet\n",
"!pip install scipy==1.15.3 --quiet\n",
"!pip install git+https://github.com/neuromatch/sspspace@neuromatch --no-deps --quiet\n",
"!pip install nengo==4.0.0 --quiet\n",
"!pip install nengo_spa==2.0.0 --quiet\n",
"!pip install --quiet matplotlib ipywidgets vibecheck"
"from os import environ as env\n",
"if any(var in env for var in [\"COLAB_RELEASE_TAG\", \"KAGGLE_KERNEL_RUN_TYPE\"]):\n",
" %pip install numpy==1.24.4 --quiet\n",
" %pip install scikit-learn==1.6.1 --quiet\n",
" %pip install scipy==1.15.3 --quiet\n",
" %pip install git+https://github.com/neuromatch/sspspace@neuromatch --no-deps --quiet\n",
" %pip install nengo==4.0.0 --quiet\n",
" %pip install nengo_spa==2.0.0 --quiet\n",
" %pip install --quiet matplotlib ipywidgets vibecheck"
]
},
{
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8 changes: 5 additions & 3 deletions tutorials/W2D2_NeuroSymbolicMethods/W2D2_Tutorial3.ipynb
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"source": [
"# @title Install dependencies\n",
"\n",
"!pip install numpy==1.24.4 --quiet\n",
"!pip install nengo nengo-spa nengo-gui --quiet\n",
"!pip install matplotlib vibecheck --quiet"
"from os import environ as env\n",
"if any(var in env for var in [\"COLAB_RELEASE_TAG\", \"KAGGLE_KERNEL_RUN_TYPE\"]):\n",
" %pip install numpy==1.24.4 --quiet\n",
" %pip install nengo nengo-spa nengo-gui --quiet\n",
" %pip install matplotlib vibecheck --quiet"
]
},
{
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