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deps: bump the python-dependencies group across 1 directory with 5 updates - #37

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dependabot/uv/python-dependencies-7794e0b76a
Aug 12, 2026
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deps: bump the python-dependencies group across 1 directory with 5 updates#37
stefan-jansen merged 2 commits into
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dependabot/uv/python-dependencies-7794e0b76a

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Bumps the python-dependencies group with 5 updates in the / directory:

Package From To
shap 0.49.1 0.52.0
hypothesis 6.164.0 6.165.2
ruff 0.16.1 0.16.2
ipython 9.15.0 9.16.1
ty 0.0.65 0.0.69

Updates shap from 0.49.1 to 0.52.0

Release notes

Sourced from shap's releases.

v0.52.0

What's Changed

Highlights

  • Native bindings rewritten with nanobind, and the build system migrated from setup.py to scikit-build-core + CMake. The Cython _kernel_lib.pyx and the existing _cext / _cext_gpu modules are now built as nanobind extensions, and MANIFEST.in / setup.py have been removed in favor of a pyproject.toml-driven build. (#4366, by @​CloseChoice and @​daidahao and @​claude)
  • Minimum dependency versions raised to follow SPEC 0. (#4310, by @​CloseChoice)

Enhancements

Bug Fixes

  • Improve GPU TreeExplainer parity: preserve XGBoost default/missing child routing so NaN values follow the same branch as the source model, preserve vector-valued XGBoost base_score values (fixing multiclass additivity offsets), and tighten categorical handling so sklearn models with enable_categorical=True raise the existing unsupported-categorical error even when the booster does not expose feature_types. (#4997, by @​RAMitchell)
  • TreeExplainer no longer crashes with pandas nullable dtypes. (#4298, by @​tudstudent)
  • Fix NameError when with_binary=False and with_cuda=True by initializing compile_args. (#4322, by @​mohityadav8)
  • Text plot colors render correctly by converting NumPy types to float. (#4332, by @​Saloni-0465)
  • Assign the result of np.flipud so it is no longer a no-op in AdditiveForceArrayVisualizer. (#4343, by @​Mahaveerjain-18)
  • Use isinstance() instead of is for type checks. (#4373, by @​divyam-jha123)
  • Record 'sample' in Explanation.op_history instead of '__getitem__'. (#4376, by @​tarun-227)
  • Move the unreachable large-dataset warning into the interventional branch. (#4392, by @​Mahaveerjain-18)
  • Fix "structure of inputs doesn't match the expected structure". (#4410, by @​shaivimalik)
  • Fix the return value from is_color_map() in plots/_beeswarm.py. (#4421, by @​maniktyagi04)
  • Suppress the UserWarning when LGBMRegressor was fitted with feature names. (#4422, by @​shaivimalik)

... (truncated)

Commits
  • 8461059 FIX: Improve GPU TreeExplainer parity (#4997)
  • 8549e6b fix: use isinstance() instead of type() is tuple checks (#4508)
  • 3be7001 remove webpack dependency for sickness scores (#5018)
  • 6e9f9b8 build(deps): bump qs and express in /javascript (#5015)
  • 9be5435 build(deps): bump idna from 3.11 to 3.15 in /docs (#5007)
  • 52dd763 pin torch to <=2.11.0 in pyproject.toml (#5017)
  • d8f2e76 build(deps-dev): bump webpack-dev-server in /javascript (#5009)
  • ac6e677 build(deps-dev): bump @​babel/plugin-transform-modules-systemjs (#4991)
  • 679b2ee FIX: warn when covariance matrix is singular in LinearExplainer (#4471)
  • ce4abd7 build(deps): bump mistune from 3.2.0 to 3.2.1 (#4990)
  • Additional commits viewable in compare view

Updates hypothesis from 6.164.0 to 6.165.2

Commits
  • deb4d49 Bump hypothesis version to 6.165.2 and update changelog
  • a9eff28 Merge pull request #4842 from HypothesisWorks/claude/invert-everything
  • c555e58 Cover the remaining _invert error paths in tests
  • f9882a3 Apply review feedback: type ValueHole.value as object, polish docs and tests
  • 8dca9e1 Restructure timezones() so its draws can be re-encoded
  • 7e309df Invert dictionaries, unique lists with tuple_suffixes, and fixed_dictionaries
  • 77ca292 Implement _invert for most remaining strategy combinators
  • 5b20755 Bump hypothesis version to 6.165.1 and update changelog
  • b4f2e92 Merge pull request #4806 from HypothesisWorks/claude/widening-shrinks
  • 9431e20 Apply suggestions from code review
  • Additional commits viewable in compare view

Updates ruff from 0.16.1 to 0.16.2

Release notes

Sourced from ruff's releases.

0.16.2

Release Notes

Released on 2026-08-06.

Bug fixes

  • [flake8-pyi] Avoid false positives on singledispatch functions (PYI041) (#27335)

Server

  • Register formatting capabilities dynamically to exclude TOML files (#27332)

Contributors

Install ruff 0.16.2

Install prebuilt binaries via shell script

curl --proto '=https' --tlsv1.2 -LsSf https://releases.astral.sh/github/ruff/releases/download/0.16.2/ruff-installer.sh | sh

Install prebuilt binaries via powershell script

powershell -ExecutionPolicy Bypass -c "irm https://releases.astral.sh/github/ruff/releases/download/0.16.2/ruff-installer.ps1 | iex"

Download ruff 0.16.2

File Platform Checksum
ruff-aarch64-apple-darwin.tar.gz Apple Silicon macOS checksum
ruff-x86_64-apple-darwin.tar.gz Intel macOS checksum
ruff-aarch64-pc-windows-msvc.zip ARM64 Windows checksum
ruff-i686-pc-windows-msvc.zip x86 Windows checksum
ruff-x86_64-pc-windows-msvc.zip x64 Windows checksum
ruff-aarch64-unknown-linux-gnu.tar.gz ARM64 Linux checksum
ruff-i686-unknown-linux-gnu.tar.gz x86 Linux checksum
ruff-powerpc64-unknown-linux-gnu.tar.gz PPC64 Linux checksum
ruff-powerpc64le-unknown-linux-gnu.tar.gz PPC64LE Linux checksum
ruff-riscv64gc-unknown-linux-gnu.tar.gz RISCV Linux checksum
ruff-s390x-unknown-linux-gnu.tar.gz S390x Linux checksum

... (truncated)

Changelog

Sourced from ruff's changelog.

0.16.2

Released on 2026-08-06.

Bug fixes

  • [flake8-pyi] Avoid false positives on singledispatch functions (PYI041) (#27335)

Server

  • Register formatting capabilities dynamically to exclude TOML files (#27332)

Contributors

Commits
  • 5b48a04 Bump 0.16.2 (#27555)
  • 1b9e5fc Update Swatinem/rust-cache action to v2.9.2 (#27568)
  • c4e86fc [ty] Add helper extension methods for half-range and equality constraints (#2...
  • 17a00de [ty] Reuse primer commands in memory reports (#27553)
  • 6ea296b [ty] Normalize type labels in structured docstrings (#26923)
  • 2fc445f [ty] Diagnose invalid getattr calls (#27502)
  • 22c7823 [ty] Enable (but downrank) auto-import completion suggestions from stub-only ...
  • 05160d5 [ty] Diagnose invalid descriptor __get__ calls (#27400)
  • baea3d0 [ty] Expose strict analysis options in the playground (#27543)
  • c88946e [ty] Bump ecosystem-analyzer for strict project settings (#27542)
  • Additional commits viewable in compare view

Updates ipython from 9.15.0 to 9.16.1

Commits

Updates ty from 0.0.65 to 0.0.69

Release notes

Sourced from ty's releases.

0.0.69

Release Notes

Released on 2026-08-06.

Core type checking

  • isinstance narrowing for generic classes is now more gradual by default (#27308)

    This new behavior is more similar to what other major type checkers do. For example:

    def f(xs: object):
    if isinstance(xs, list):
        reveal_type(xs)  # now: `list[Unknown]`, before: `Top[list[Unknown]]`

    Note: you might consider enabling analysis.strict-generic-narrowing if you prefer the strictly correct behavior.

Contributors

Install ty 0.0.69

Install prebuilt binaries via shell script

curl --proto '=https' --tlsv1.2 -LsSf https://releases.astral.sh/github/ty/releases/download/0.0.69/ty-installer.sh | sh

Install prebuilt binaries via powershell script

powershell -ExecutionPolicy Bypass -c "irm https://releases.astral.sh/github/ty/releases/download/0.0.69/ty-installer.ps1 | iex"

Download ty 0.0.69

File Platform Checksum
ty-aarch64-apple-darwin.tar.gz Apple Silicon macOS checksum
ty-x86_64-apple-darwin.tar.gz Intel macOS checksum
ty-aarch64-pc-windows-msvc.zip ARM64 Windows checksum
ty-i686-pc-windows-msvc.zip x86 Windows checksum
ty-x86_64-pc-windows-msvc.zip x64 Windows checksum
ty-aarch64-unknown-linux-gnu.tar.gz ARM64 Linux checksum
ty-i686-unknown-linux-gnu.tar.gz x86 Linux checksum
ty-powerpc64-unknown-linux-gnu.tar.gz PPC64 Linux checksum

... (truncated)

Changelog

Sourced from ty's changelog.

0.0.69

Released on 2026-08-06.

Core type checking

  • isinstance narrowing for generic classes is now more gradual by default (#27308)

    This new behavior is more similar to what other major type checkers do. For example:

    def f(xs: object):
    if isinstance(xs, list):
        reveal_type(xs)  # now: `list[Unknown]`, before: `Top[list[Unknown]]`

    Note: you might consider enabling analysis.strict-generic-narrowing if you prefer the strictly correct behavior.

Contributors

0.0.68

Released on 2026-08-05.

Diagnostics

  • Preserve property getter call errors (#27509)
  • Simplify numeric tower displays (e.g., float over int | float) (#27406)
  • Suggest closing open TypedDict types for Mapping compatibility (#27512)

Core type checking

  • Avoid double inference of Unpack operands in Union (#27525)
  • Fix panic from mismatched OR-pattern bindings (#27533)

Contributors

0.0.67

Released on 2026-08-05.

LSP server

... (truncated)

Commits

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@dependabot
deps: bump the python-dependencies group across 1 directory with 5 up…
f2e678a 
…dates

Bumps the python-dependencies group with 5 updates in the / directory:

| Package | From | To |
| --- | --- | --- |
| [shap](https://github.com/shap/shap) | `0.49.1` | `0.52.0` |
| [hypothesis](https://github.com/HypothesisWorks/hypothesis) | `6.164.0` | `6.165.2` |
| [ruff](https://github.com/astral-sh/ruff) | `0.16.1` | `0.16.2` |
| [ipython](https://github.com/ipython/ipython) | `9.15.0` | `9.16.1` |
| [ty](https://github.com/astral-sh/ty) | `0.0.65` | `0.0.69` |



Updates `shap` from 0.49.1 to 0.52.0
- [Release notes](https://github.com/shap/shap/releases)
- [Changelog](https://github.com/shap/shap/blob/master/docs/release_notes.rst)
- [Commits](shap/shap@v0.49.1...v0.52.0)

Updates `hypothesis` from 6.164.0 to 6.165.2
- [Release notes](https://github.com/HypothesisWorks/hypothesis/releases)
- [Commits](HypothesisWorks/hypothesis@v6.164.0...v6.165.2)

Updates `ruff` from 0.16.1 to 0.16.2
- [Release notes](https://github.com/astral-sh/ruff/releases)
- [Changelog](https://github.com/astral-sh/ruff/blob/main/CHANGELOG.md)
- [Commits](astral-sh/ruff@0.16.1...0.16.2)

Updates `ipython` from 9.15.0 to 9.16.1
- [Release notes](https://github.com/ipython/ipython/releases)
- [Commits](ipython/ipython@9.15.0...9.16.1)

Updates `ty` from 0.0.65 to 0.0.69
- [Release notes](https://github.com/astral-sh/ty/releases)
- [Changelog](https://github.com/astral-sh/ty/blob/main/CHANGELOG.md)
- [Commits](astral-sh/ty@0.0.65...0.0.69)

---
updated-dependencies:
- dependency-name: shap
  dependency-version: 0.52.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-dependencies
- dependency-name: hypothesis
  dependency-version: 6.165.2
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: python-dependencies
- dependency-name: ruff
  dependency-version: 0.16.2
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: python-dependencies
- dependency-name: ipython
  dependency-version: 9.16.1
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-dependencies
- dependency-name: ty
  dependency-version: 0.0.69
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: python-dependencies
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot dependabot Bot added dependencies Dependency updates python Python dependencies labels Aug 11, 2026
@stefan-jansen
stefan-jansen merged commit 9b2613a into main Aug 12, 2026
25 checks passed
@stefan-jansen
stefan-jansen deleted the dependabot/uv/python-dependencies-7794e0b76a branch August 12, 2026 02:03
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