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docs: update parameterization tutorials for group-prior preflight - #1275

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AlexanderFengler merged 3 commits into
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codex/1273-parameterization-tutorials
Sep 7, 2026
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docs: update parameterization tutorials for group-prior preflight#1275
AlexanderFengler merged 3 commits into
mainfrom
codex/1273-parameterization-tutorials

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@AlexanderFengler

@AlexanderFengler AlexanderFengler commented Aug 30, 2026

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Summary

  • migrate the centered/non-centered tutorial to marimo and distinguish mathematical reparameterization, raw Bambi's dropped-mean graph, and HSSM's pre-build guard
  • migrate the per-parameter tutorial to marimo and cover model, component-dictionary, and per-prior precedence; generated centered fallback; and centered location-ridge diagnostics
  • commit output-bearing Jupyter artifacts with nine model graphs total while preserving both existing documentation routes
  • publish only the Jupyter artifacts in MkDocs and retain the paired marimo files as the runnable sources of truth

Closes #1273.

Release scope

This is a documentation-only companion intended for HSSM 0.5.0. It explains the production prior policy from #1272; it does not introduce defaults, sampler behavior, or TruncatedNormal research code.

Stack

Temporarily targets codex/1225-group-only-safe-priors. After #1272 merges, this PR can be retargeted to main without changing its three tutorial commits.

Validation

  • rebased onto refreshed Fix safe priors for unmatched group-only effects #1272 head 481d0ade; the two tutorial commits are patch-equivalent and the publication commit differs only by retaining current-main MkDocs source exclusions
  • both marimo sources pass strict checks
  • notebook inspection: 5 + 4 SVG graphs, zero errors, zero machine-local paths; all nine rendered graphs were visually checked
  • documentation weight/path checks and strict MkDocs build passed
  • Ruff, formatting, Pyrefly, all applicable hooks, and git diff --check passed

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@AlexanderFengler
AlexanderFengler force-pushed the codex/1273-parameterization-tutorials branch from 2b2ae54 to 4b26477 Compare September 7, 2026 05:02
@AlexanderFengler
AlexanderFengler marked this pull request as ready for review September 7, 2026 05:03
Base automatically changed from codex/1225-group-only-safe-priors to main September 7, 2026 21:21
@AlexanderFengler
AlexanderFengler merged commit a0849de into main Sep 7, 2026
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Update parameterization tutorials for group-prior preflight

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