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1. straindesign straindesign Public

   StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy

   Python 52 8

2. autopacmen autopacmen Public

   Retrieves kcat data and adds protein allocation constraints to stoichiometric metabolic models according to the sMOMENT method. Also check out its spiritual successor, COBRA-k: https://github.com/k…

   HTML 17 8

3. Kinetic-models-of-E.-coli Kinetic-models-of-E.-coli Public

   Kinetic model of E. coli's central metabolism under anaerobic conditions. These models are part of a submitted manuscript of Boecker et al.

   3

4. CommModelPy CommModelPy Public

   Create stoichiometric metabolic network models of single-species or multi-species communities

   Python 3

5. MEMO MEMO Public

   Models and scripts for the MEMO paper

   MATLAB 1

6. astheriscPackage astheriscPackage Public

   Search for and find thermodynamic advantages for product synthesis using metabolic single-species community models

   MATLAB