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LongReads: add mito SV calling

Status: Open.

#551 In imgag/megSAP;

· leonschuetz opened on Aug 10, 2026

SpliceAI threshold

Status: Open.

#550 In imgag/megSAP;

· leonschuetz opened on Aug 6, 2026

KASP check

Status: Open.

#549 In imgag/megSAP;

· Ott-Alexander opened on Aug 5, 2026

Add Dragen MRJD VCF

Status: Open.

#548 In imgag/megSAP;

· leonschuetz opened on Jul 30, 2026

update PacBio tools

Status: Open.

#547 In imgag/megSAP;

· marc-sturm opened on Jul 29, 2026

Add RE BCLAF3

Status: Open.

#546 In imgag/megSAP;

· marc-sturm opened on Jul 28, 2026

Update benchmarks to GiaB v5

Status: Open.

#544 In imgag/megSAP;

· marc-sturm opened on Jul 27, 2026

add mito challing for PacBio

Status: Open.

#543 In imgag/megSAP;

· marc-sturm opened on Jul 22, 2026

Somatic Long-read Pipeline

Status: Open.

#542 In imgag/megSAP;

· Ott-Alexander opened on Jul 20, 2026

add Pore-C pipeline

Status: Open.

#540 In imgag/megSAP;

· marc-sturm opened on Jul 17, 2026

Add special calling for pseudogenes e.g. for STRC

Status: Open.

#536 In imgag/megSAP;

· marc-sturm opened on Jul 14, 2026

add script to transfer a processed sample from one GSvar/megSAP instance to another

Status: Open.

#534 In imgag/megSAP;

· marc-sturm opened on Jul 6, 2026