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BOTs

BioBrick Optimization Tool for synthesis

Built over top of Brian Weitzner's codon-harmony

Functionality

Allows to optimize for multiple factors at once

  • repeats
  • gc richness
  • hairpins
  • homopolymers
  • host optimization
  • restriction enzymes
  • splice sites
  • alternative start sites

Just fill out the form and your potential sequences will appear after a few minutes

Purpose

After a teammate struggled with a sequence that had a score of over 100, and spent 2 weeks of non-stop labour trying to minimize it, a demand for a program to potentially do this faster appeared.

Software Engineering Diagrams

ContextDiagram

DFD1

DFD2_Sequence

DFD2_User

ER

RM

SAD

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BioBrick Optimization Tool for synthesis

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