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mrvollger merged 2 commits into from
Aug 14, 2026
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Advise installing FIRE from the latest tagged release #8

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e2ae8d1
Advise installing FIRE from the latest tagged release
Aug 14, 2026
9caac90
Use the releases/latest redirect one-liner for FIRE installs
Aug 14, 2026
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12 changes: 10 additions & 2 deletions src/fire/run.md
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Expand Up @@ -14,14 +14,22 @@ The FIRE pipeline is a Snakemake workflow for calling Fiber-seq Inferred Regulat

Please start by installing [pixi](https://pixi.sh/latest/) which handles the environment of the FIRE workflow.

Then install FIRE using `git` and `pixi`:
Then install the latest [tagged release](https://github.com/fiberseq/FIRE/releases) of FIRE using `git` and `pixi`:

```bash
git clone https://github.com/fiberseq/FIRE.git
git clone -b $(basename $(curl -fsSLo /dev/null -w '%{url_effective}' https://github.com/fiberseq/FIRE/releases/latest)) https://github.com/fiberseq/FIRE.git
cd FIRE
pixi install
```

To update an existing installation to the latest release:

```bash
git fetch --tags
git checkout $(git describe --tags --abbrev=0 origin/main)
pixi install
```

We then recommend quickly testing your installation by running the test suite:

```bash
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