feat: per-sample reference support via manifest ref/ref_name columns - #71

Merged

mrvollger merged 7 commits into

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feat-per-sample-refs

Aug 15, 2026

Commits on Aug 14, 2026

feat: per-sample reference support via manifest ref/ref_name columns

Mitchell R. Vollger
and
claude
committed
6db2985
fix: anchor all whole-genome bed sorts and sorted intersects to the genome file

Mitchell R. Vollger
and
claude
committed
0c05d74

Commits on Aug 15, 2026

fix: address ordering re-review findings

Mitchell R. Vollger
and
claude
committed
0d71937
fix: close targeted-review findings on the final fix commit

Mitchell R. Vollger
and
claude
committed
9d78a07
chore: remove stray review artifact committed by accident

Mitchell R. Vollger
and
claude
committed
6caa5cf
refactor: drop the parse-time stale genome file guard

Mitchell R. Vollger
and
claude
committed
aeb883c
style: write code comments in simple English

Mitchell R. Vollger
and
claude
committed
caf57f4