fix: exclude_from_shuffle when no excludes are configured - #65
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Guard the empty-EXCLUDES case (non-hg38 references) and use gunzip -cf instead of less for portable plain/gzip handling. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
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Split out of #62. Guards the empty-
EXCLUDEScase (non-hg38 references) soexclude_from_shuffleno longer fails, and replaceslesswithgunzip -cffor portable handling of mixed plain/gzip/bgzip inputs on macOS and Linux.