Container images for the E11 preprocessing pipeline.
BigStitcher-Spark with concurrent tile optimization enabled. Based on JaneliaSciComp/BigStitcher-Spark with patches from:
- e11bio/mpicbg — Fix
TileUtil.optimizeConcurrently()crash on disconnected tiles - e11bio/multiview-reconstruction
— Re-enable concurrent solver in
GlobalOptIterative
# Pull the image
docker pull ghcr.io/e11bio/bigstitcher-spark:latest
# Use in Nextflow (apptainer)
apptainer.runOptions = '' # no bind mount needed
process {
withName:BIGSTITCHER_MODULE {
container = 'ghcr.io/e11bio/bigstitcher-spark:latest'
}
}Built automatically on push to main via GitHub Actions.