Single Cell Biotechnology Laboratory @GATech
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SpatialViz
SpatialViz PublicCode for "Spatially visualized single-cell pathology of highly multiplexed protein profiles in health and disease"
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Ion-Beam-Tomography
Ion-Beam-Tomography PublicCode for "Nanoscopic subcellular imaging enabled by Ion Beam Tomography"
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Spatial-organelle-networks
Spatial-organelle-networks PublicData and code for "Spatial subcellular organelle networks in single cells"
Repositories
- MetaboFM Public
MetaboFM: a two-stage self-supervised representation learning framework for spatial metabolomics, combining a Barlow Twins ion-image encoder with a cross-channel aggregation Transformer, trained and benchmarked on a large public mass spectrometry imaging (MSI) corpus.
- dynamics Public
Diffusion-field inference of non-contact cell-cell communication from single-cell spatial transcriptomics datasets
- MetaBar Public
- sim-biomics Public
Code for manuscript "Spatial renal biomarker discovery using multiplexed immunofluorescent and high-dimensional colorimetric staining"
- SjoMap Public
Code for manuscript titled "Spatial multi-omics reveals distinct stromal signatures of Sjögren’s Disease by anti-SSA antibody profile in Minor Salivary Gland tissues"
- 3D-iseqPLA Public
- MAGIC Public
Guided super-resolution MSI and graph-based metabolic barcoding for high-definition, single-cell spatial metabolomics and tissue microenvironment analysis.
- spatialcurvseq Public
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