feat: delegate feature persistence to copick - #95
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🤖 I have created a release *beep* *boop* --- ## [2.0.0-alpha.1](copick-utils-v1.8.0...copick-utils-v2.0.0-alpha.1) (2026-08-18) ### ✨ Features * delegate feature persistence to copick ([#95](#95)) ([71b8290](71b8290)) * resolve tomogram levels from OME metadata ([#93](#93)) ([63e6273](63e6273)) ### 🐞 Bug Fixes * bump actions/setup-python from 6 to 7 ([#80](#80)) ([45aed3d](45aed3d)) * bump chanzuckerberg/github-actions from 6.29.4 to 6.32.0 ([#82](#82)) ([9e5da98](9e5da98)) ### 🧪 Tests * establish Zarr migration baseline ([#94](#94)) ([d55fc36](d55fc36)) * verify delegated canonical writers ([#96](#96)) ([0c9e5cd](0c9e5cd)) ### ⚙ Continuous Integration * configure v2 alpha releases ([0696b9b](0696b9b)) * gate releases on validated artifacts ([#97](#97)) ([ae873d3](ae873d3)) --- Merging this PR will publish a copick-utils alpha prerelease to PyPI. Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
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Tracks #86 and is the fourth PR in the copick-utils Zarr v3 migration stack.
Base:
uermel/zarr-v3-u2-delegated-writersThis replaces the legacy root-array/Blosc feature writer while preserving its public API and its frozen result for inputs that already worked:
chunks=Noneandshards=Nonecontrols;float32tensor in a temporarynp.memmapinstead of process memory;CopickFeatures.from_numpy()write; andTargeted tests preserve the frozen pre-migration digest, cover the formerly crashing boundary geometry on all three axes, detect unwritten cells, verify staging cleanup and one-write behavior, and cap peak Python memory below both 64 MiB and 75% of the logical 30-channel output size. Broader converter and layout coverage remains deferred.
Validation: all 63 behavior tests and pinned pre-commit hooks pass. The full suite passes on Python 3.11.15/Zarr 3.1.6 and Python 3.12.10/Zarr 3.3.0.
The next stack layer is
uermel/zarr-v3-u4-release-gates.