feat: resolve tomogram levels from OME metadata - #93
Merged
uermel merged 6 commits intoAug 18, 2026
Conversation
uermel
force-pushed
the
uermel/zarr-v3-u1-metadata-readers
branch
3 times, most recently
from
August 18, 2026 17:54
a309d46 to
db3a42d
Compare
This was referenced Aug 18, 2026
uermel
force-pushed
the
uermel/zarr-v3-u1-metadata-readers
branch
from
August 18, 2026 17:58
db3a42d to
e10fd7a
Compare
uermel
force-pushed
the
uermel/zarr-v3-u1-metadata-readers
branch
from
August 18, 2026 21:16
e10fd7a to
66dc626
Compare
uermel
pushed a commit
that referenced
this pull request
Aug 18, 2026
🤖 I have created a release *beep* *boop* --- ## [2.0.0-alpha.1](copick-utils-v1.8.0...copick-utils-v2.0.0-alpha.1) (2026-08-18) ### ✨ Features * delegate feature persistence to copick ([#95](#95)) ([71b8290](71b8290)) * resolve tomogram levels from OME metadata ([#93](#93)) ([63e6273](63e6273)) ### 🐞 Bug Fixes * bump actions/setup-python from 6 to 7 ([#80](#80)) ([45aed3d](45aed3d)) * bump chanzuckerberg/github-actions from 6.29.4 to 6.32.0 ([#82](#82)) ([9e5da98](9e5da98)) ### 🧪 Tests * establish Zarr migration baseline ([#94](#94)) ([d55fc36](d55fc36)) * verify delegated canonical writers ([#96](#96)) ([0c9e5cd](0c9e5cd)) ### ⚙ Continuous Integration * configure v2 alpha releases ([0696b9b](0696b9b)) * gate releases on validated artifacts ([#97](#97)) ([ae873d3](ae873d3)) --- Merging this PR will publish a copick-utils alpha prerelease to PyPI. Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Tracks #85 and is the second PR in the copick-utils Zarr v3 migration stack.
Base:
uermel/zarr-v3-u0-test-gateThis moves the package onto the published core migration contract and removes metadata-blind level reads:
copick>=2.0.0a1,pydantic>=2, andzarr>=3.1.6,<4;get_level_array()helper backed bycopick.util.ome.get_level_path();"0"direct readers;s0paths in Zarr v2 and v3 stores;The earlier Python 3.14 failure came from uv 0.7.13 selecting Python 3.14.0b2. CI now uses uv 0.12.4 and asserts a final interpreter. There is no separate dependency-string or minimum-dependency test.
Validation: 48 tests pass with two expected legacy-feature-writer xfails; stable Python 3.14.7 with Pydantic 2.13.4 passes.
The next stack layer is
uermel/zarr-v3-u2-delegated-writers.