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CCDM Bioinformatics

10 followers
https://ccdmb.github.io

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BioDendro BioDendro Public

A package to cluster and visualise MS/MS spectral data

Jupyter Notebook 11 1
catastrophy catastrophy Public

CATAStrophy predicts filamentous plant pathogen lifestyle characteristics based on their CAZyme composition.

Python 6
predector predector Public

Effector prediction pipeline based on protein properties.

Shell 17 10

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Showing 10 of 27 repositories

EffectorFisher-core Public
🧬 EffectorFisher links pangenome isoforms to disease traits to predict phenotype-associated effectors. 🌾🦠

ccdmb/EffectorFisher-core's past year of commit activity

Python 0 MIT 0 0 0 Updated Jul 8, 2026
EFtranslocator Public
Predict various features relevant to plant host-cell translocation and sub-cellular localisation, for a given protein FASTA input

ccdmb/EFtranslocator's past year of commit activity

Python 0 GPL-3.0 0 0 0 Updated Jul 1, 2026
SUSSscan Public
Scan fungal proteome FASTA for identifiable effectors and predicted SUSS structural families based on RemEff clusters

ccdmb/SUSSscan's past year of commit activity

Python 0 GPL-3.0 0 0 0 Updated Jul 1, 2026
predector Public
Effector prediction pipeline based on protein properties.

ccdmb/predector's past year of commit activity

Shell 17 Apache-2.0 10 15 (1 issue needs help) 1 Updated Jul 18, 2025
predector-utils Public
Utilities for running the predector pipeline.

ccdmb/predector-utils's past year of commit activity

Python 0 Apache-2.0 1 2 1 Updated Apr 11, 2025
postasm Public Forked from darcyabjones/postasm
QC and tidying on assembled genomes.

ccdmb/postasm's past year of commit activity

Groovy 0 Apache-2.0 1 0 0 Updated Nov 15, 2024
pante Public Forked from darcyabjones/pante
A pipeline for predicting and masking transposable elements in multiple genomes.

ccdmb/pante's past year of commit activity

Groovy 0 Apache-2.0 10 0 0 Updated Nov 15, 2024
qcflow Public Forked from darcyabjones/qcflow
Perform basic QC on illumina data

ccdmb/qcflow's past year of commit activity

Groovy 0 MIT 1 0 0 Updated Nov 15, 2024
mitoflow Public Forked from darcyabjones/mitoflow
A small pipeline for assembling mitochondrial genomes and filtering reads prior to assembly.

ccdmb/mitoflow's past year of commit activity

Groovy 0 MIT 1 0 0 Updated Nov 15, 2024
ccdmb.github.io Public
Front page for the CCDM bioinformatics group.

ccdmb/ccdmb.github.io's past year of commit activity

0 Apache-2.0 0 0 0 Updated Nov 13, 2023

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