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ci: migrate from tox to uv test action #469

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10 changes: 4 additions & 6 deletions .github/workflows/test_and_deploy.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -61,9 +61,6 @@ jobs:
run: brew install hdf5

# Helps set up VTK with a headless display
- uses: pyvista/setup-headless-display-action@v3

# Sets up ffmpeg to we can run video tests on CI
- uses: FedericoCarboni/setup-ffmpeg@v2
if: matrix.os != 'macos-latest'
id: setup-ffmpeg
Expand All @@ -73,11 +70,12 @@ jobs:
run: brew install ffmpeg

# Run tests
- uses: neuroinformatics-unit/actions/test@v2
- name: Run tests
uses: neuroinformatics-unit/actions/test-uv@main
with:
python-version: ${{ matrix.python-version }}
python-version: "${{ matrix.python-version }}"
secret-codecov-token: ${{ secrets.CODECOV_TOKEN }}

use-headless: 'true'

- name: Notify slack on scheduled failure
if: failure() && github.event_name == 'schedule'
Expand Down
31 changes: 1 addition & 30 deletions pyproject.toml
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Expand Up @@ -57,7 +57,6 @@ dev = [
"pytest",
"pytest-cov",
"coverage",
"tox",
"black",
"mypy",
"pre-commit",
Expand All @@ -66,7 +65,6 @@ dev = [
]
nb = ["jupyter", "k3d"]


[build-system]
requires = ["setuptools>=45", "wheel", "setuptools_scm[toml]>=6.2"]
build-backend = "setuptools.build_meta"
Expand All @@ -78,9 +76,8 @@ include-package-data = true
include = ["brainrender*"]
exclude = ["tests*", "docs*", "examples*", "imgs*"]


[tool.pytest.ini_options]
addopts = "--cov=brainrender"
addopts = "--cov=brainrender --cov-report=xml --color=yes -vv"
markers = [
"slow: marks tests as slow (deselect with '-m \"not slow\"')",
"local: marks test as local (not for CI)",
Expand Down Expand Up @@ -113,29 +110,3 @@ ignore = ["E501", "E402"]

[tool.ruff.lint]
select = ["I", "E", "F"]

[tool.tox]
legacy_tox_ini = """
[tox]
envlist = py{311,312,313}
isolated_build = True

[gh-actions]
python =
3.11: py311
3.12: py312
3.13: py313

[testenv]
extras =
dev
commands =
pytest -v --color=yes --cov=brainrender --cov-report=xml
passenv =
CI
GITHUB_ACTIONS
DISPLAY
XAUTHORITY
NUMPY_EXPERIMENTAL_ARRAY_FUNCTION
PYVISTA_OFF_SCREEN
"""
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