Name		Name	Last commit message	Last commit date
data		data
thesis		thesis
.gitignore		.gitignore
FASTQ.py		FASTQ.py
FASTQSequence.C		FASTQSequence.C
FASTQSequence.h		FASTQSequence.h
Piper.C		Piper.C
Piper.h		Piper.h
README.md		README.md
atomicops.h		atomicops.h
catch.hpp		catch.hpp
commands.C		commands.C
commands.h		commands.h
db_setup.py		db_setup.py
fastq.h		fastq.h
find_primers.py		find_primers.py
gref.C		gref.C
import_reads.py		import_reads.py
insert_accelerator.C		insert_accelerator.C
makefile		makefile
newpack.C		newpack.C
newpack.h		newpack.h
pip.C		pip.C
print_as_fastq.py		print_as_fastq.py
readerwriterqueue.h		readerwriterqueue.h
shell.c		shell.c
sqlite3.c		sqlite3.c
sqlite3.h		sqlite3.h
sqlite3ext.h		sqlite3ext.h
stream_trimmomatic.C		stream_trimmomatic.C
stream_trimmomatic.h		stream_trimmomatic.h
testFASTQ		testFASTQ
testFASTQ.C		testFASTQ.C
testFastRead		testFastRead
testFastRead.C		testFastRead.C
testPack.C		testPack.C
testRawWrite.C		testRawWrite.C
testpipe.sh		testpipe.sh
testrv_16S.sh		testrv_16S.sh

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Code and report for a small tool to optimize 16S sequencing pipelines

16s 16s-rrna compression next-generation-sequencing pipeline sequencing-rna sqlite

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