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Fix ChipSeeker 1.32 image build - #13

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byee4 merged 3 commits into
mainfrom
codex/fix-chipseeker-build
Aug 16, 2026
Merged

Fix ChipSeeker 1.32 image build#13
byee4 merged 3 commits into
mainfrom
codex/fix-chipseeker-build

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@byee4

@byee4 byee4 commented Aug 16, 2026

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Summary

  • update the unavailable Jupyter base image and remove deprecated metadata
  • work around Bioconda data-package post-link failures and install required annotation data in dependency order
  • pin ChIPseeker to 1.32.0 and verify it loads during the image build

Root cause

Legacy Bioconda data package hooks either failed while R was being upgraded or were skipped by current mamba, leaving required R annotation packages unavailable at runtime.

Validation

  • docker build --platform linux/amd64 -t containers-chipseeker-build-check:1.32 images/chipseeker/1.32
  • runtime load of ChIPseeker confirmed version 1.32.0
  • verified the r-chipseeker-1.32 Jupyter kernel is installed
  • git diff --check

@byee4
byee4 merged commit 988a312 into main Aug 16, 2026
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