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About running time

Status: Open.

#24 In YangLab/CLEAR;

· HowardChen330 opened on Nov 21, 2025

Trouble with using 'circ_quant' function (CLEAR with STAR Alignment)

Status: Open.

#23 In YangLab/CLEAR;

· jennynuyirs opened on Jun 16, 2024

Problem with pysam: ValueError: fetch called on bamfile without index

Status: Open.

#22 In YangLab/CLEAR;

· BenNiLu opened on Mar 12, 2024

CLEAR: python2 or python3?

Status: Open.

#21 In YangLab/CLEAR;

· nliorni opened on Sep 23, 2022

IOError: [Errno 2] No such file or directory: circ/genePred.tmp

Status: Open.

#20 In YangLab/CLEAR;

· lssb opened on Jan 22, 2022

NO quant or circular output

Status: Open.

#19 In YangLab/CLEAR;

· lbwfff opened on Sep 23, 2021

TypeError when Running CLEAR: 'NoneType' object is not iterable

Status: Open.

#18 In YangLab/CLEAR;

· JerryZhang-1222 opened on Jul 21, 2021

tophat fusion error

Status: Open.

#16 In YangLab/CLEAR;

· sharmi85 opened on Jan 9, 2021

exonFrames field is being added, -genePredExt but no valid frames

Status: Open.

#13 In YangLab/CLEAR;

· sharmi85 opened on Dec 28, 2020

Tophat-fusion error

Status: Open.

#10 In YangLab/CLEAR;

· bounlu opened on Jun 5, 2020

FPBcirc vs FPBlinear comparison from different sequencing data

Status: Open.

#8 In YangLab/CLEAR;

· bounlu opened on Jun 3, 2020

CLEAR availability in anaconda

Status: Open.

#7 In YangLab/CLEAR;

· bounlu opened on Jun 2, 2020