This repository contains reorganized code used to generate results for the paper Interpretable and scalable gene set activity analysis with GESSO reveals functional tissue architecture.
- Subdirectories in this repository are organized by main figure number.
- All analyses were performed on the OSCAR compute system.
- Please visit the official GESSO Python package for documentation and demos.
- This analysis code was reorganized for release. Hard-coded file paths may therefore require adjustment. Filenames and content may retain terminology used during development.