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Fixing -s bug (it was not being used previously) #94

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Merged
DanielOlson merged 1 commit into from
Aug 28, 2026
Merged

Fixing -s bug (it was not being used previously) #94

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2 changes: 1 addition & 1 deletion src/cli.hpp
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Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,7 @@
#ifndef ULTRA_CLI_HPP
#define ULTRA_CLI_HPP

#define ULTRA_VERSION_STRING "1.2.1"
#define ULTRA_VERSION_STRING "1.2.2"
#define DEBUG_STRING ""
#ifdef DEBUG_PRAGMA
#undef DEBUG_STRING
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3 changes: 2 additions & 1 deletion src/ultra.cpp
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Expand Up @@ -326,7 +326,8 @@ void Ultra::OutputRepeats(bool flush) {
}

r->SortConsensi();
if (r->repeatLength / r->repeatPeriod >= settings->min_units)
if (r->regionScore >= scoreThreshold &&
r->repeatLength / r->repeatPeriod >= settings->min_units)
OutputRepeat(r);

delete r;
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