Snitkin-Lab-Umich
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Showing 10 of 54 repositories
- pangenome_blast_smk Public
A snakemake pipeline for comparing Panaroo pangenome results against a BLAST search
- SNPmake Public
Updated Snakemake implementation of SNPkit for microbial variant calling, filtering, masking and reference based consensus alignment generation.
- NG-probe Public
A Snakemake pipeline for culture-free Neisseria gonorrhoeae genome reconstruction and detection of putative resistance determinants from probe-based genomic sequencing.
- EPID582-Winter-2026 Public
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