The Pistilli Lab

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1. ColonyTrace ColonyTrace Public

   A comprehensive software suite for tracking the full lifespan of research mice.

   Python 1

2. RFDsimulator RFDsimulator Public

   Code for RFD simulator manuscript and companion web app.

   Jupyter Notebook 1

3. CLAMSwrangler CLAMSwrangler Public

   Python program for cleaning, trimming, binning, and reformatting of data generated by the Columbus Instruments CLAMS for downstream statistical analysis.

   Python

4. RNAseq-pipeline RNAseq-pipeline Public

   Pipeline for processing bulk RNA-seq data from raw .fastq files to read counts.

   Shell

5. PHYSwrangler PHYSwrangler Public

   Code to process data generated by Aurora Scientific muscle physiology system.

   Python

6. miRNAseq-Pipeline miRNAseq-Pipeline Public

   Scripts for processing miRNA sequencing data using the miRDeep2 package

   Shell