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Pull requests: MDAnalysis/mdanalysis

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Apply black to inactive code
#5438 opened Jul 14, 2026 by RMeli Member Loading…
6 tasks
StaticFetcher() Implementation + from_pdb() refactor
#5436 opened Jul 14, 2026 by jauy123 Contributor Loading…
6 tasks done
change XTC/TRR tests for lock file presence
#5423 opened Jul 11, 2026 by orbeckst Member Loading…
6 tasks done
Fix guess_TopologyAttrs for empty Elements and Atomtypes
#5416 opened Jul 2, 2026 by AnimeshPriyanshu Loading…
3 of 6 tasks
Fix incorrect parameter names in docstrings
#5412 opened Jun 29, 2026 by eeshsaxena Loading…
4 of 5 tasks
Fix #3743: Modernize deprecated test assertions in hydrogen bond tests AI-assisted Generated with significant AI/LLM assistance testing
#5400 opened Jun 17, 2026 by ShivansGupta25 Loading…
Updates to wheel deployment workflow
#5386 opened May 25, 2026 by IAlibay Member Loading…
6 tasks
2.11
[WIP] Fix Cron CI
#5383 opened May 25, 2026 by IAlibay Member Draft
6 tasks
standardize logging.getLogger() to use __name__ (Issue #5369) AI-assisted Generated with significant AI/LLM assistance
#5376 opened May 5, 2026 by Jatin-Khiyani Loading…
4 of 6 tasks
Refactoring the logging module
#5367 opened Apr 23, 2026 by jauy123 Contributor Draft
1 of 6 tasks
Performance: significant speedup and memory usage improvement for PCA().run() AI-assisted Generated with significant AI/LLM assistance Component-Analysis performance
#5352 opened Mar 29, 2026 by jberg5 Loading…
5 of 6 tasks
Add ASV benchmark for guess_bonds AI-assisted Generated with significant AI/LLM assistance benchmarks performance benchmarking with ASV close? Evaluate if issue/PR is stale and can be closed. more information needed Please reply to requests for information or the issue will be closed.
#5321 opened Mar 20, 2026 by Ananya-vit Loading…
3 of 6 tasks
DOC: fix doctests in pca.py for newer NumPy output format
#5301 opened Mar 11, 2026 by Kd1880 Loading…
4 of 6 tasks
Add benchmarks for MDAnalysis.analysis.align benchmarks performance benchmarking with ASV
#5298 opened Mar 10, 2026 by noir4201 Loading…
2 of 6 tasks
Add ASV benchmarks for MDAnalysis.lib core kernels benchmarks performance benchmarking with ASV
#5292 opened Mar 8, 2026 by Amarendra22 Contributor Loading…
Implement pip dependency caching for Azure Pipelines AI-assisted Generated with significant AI/LLM assistance close? Evaluate if issue/PR is stale and can be closed.
#5267 opened Mar 1, 2026 by unnatikdm Loading…
4 of 6 tasks
Improve developer effectiveness: unify quality gates, add Ruff linting, and fast smoke tests close? Evaluate if issue/PR is stale and can be closed. more information needed Please reply to requests for information or the issue will be closed.
#5262 opened Feb 28, 2026 by Manikantasai1724 Loading…
Add backends support for minimize_vectors Component-lib enhancement
#5235 opened Feb 18, 2026 by PardhavMaradani Contributor Loading…
6 tasks done
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