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ae65c1b
feat: add BestDose optimization functionality
Siel Feb 12, 2026
7a8f2ce
fix: use devtools::load_all() in bestdose example script
Siel Feb 12, 2026
97f7f74
fix: max_cycles are passed correctly, also error model
Siel Mar 4, 2026
41d6d0d
feat: new bestdose API
Siel Mar 6, 2026
536df31
chore: remove old functions
mnneely Mar 6, 2026
75466e9
chore: remove optimize-raw
mnneely Mar 6, 2026
e535fc9
fix: using PMcore on gh
Siel Mar 6, 2026
9764850
chore: simplify function names
mnneely Mar 7, 2026
0b39409
fix: limits from model not applied properly
mnneely Feb 16, 2026
beaf0ba
fix: plotting post predictions with data; remade data objects
mnneely Feb 17, 2026
307869a
fix: inappropriate truncating of long color names in plot.PM_data
mnneely Feb 17, 2026
08a35a2
wip: update summary.PM_sim
mnneely Feb 19, 2026
724db59
fix: missing path in PMcheck or misspelled arguments in PM_sim
mnneely Mar 4, 2026
5bb9542
chore: update documentation after merge
mnneely Mar 7, 2026
6fa0ce6
wip: creating simulated past
mnneely Mar 7, 2026
685ae4c
wip: documentation
mnneely Mar 7, 2026
0a06cf6
wip: compile with silence and only recompile if simulating with covar…
mnneely Mar 7, 2026
62d8b97
feat: add plots
mnneely Mar 7, 2026
48e0f6d
fix: remove unneeded example
mnneely Mar 7, 2026
3f4471e
wip: register S3 plot.bd method
mnneely Mar 7, 2026
c2d6950
Redesign bestdose API and fix bugs
Siel Mar 9, 2026
6b64be8
wip: update plot, add inline targets, sort standard data by id, time,…
mnneely Mar 9, 2026
f55cc21
wip: sorting PM_data
mnneely Mar 10, 2026
f7ef7c5
fix: fixed some errors in the model definition of the example, suppre…
Siel Mar 10, 2026
b671e34
fix: the bd_new example now has no time_offset
Siel Mar 10, 2026
88b0469
fix: plot is not handling properly time_offset = Null, there are stil…
Siel Mar 10, 2026
4a01cc8
wip: bias_weight -> prior_weight; target -> future. Accept list, PM_d…
mnneely Mar 10, 2026
ecb85f3
wip: remove include/exclude
mnneely Mar 10, 2026
7a09990
feat: add default date format to PMoptions based on user locale
mnneely Mar 10, 2026
4dcebd3
wip: updating report
mnneely Mar 13, 2026
d6a4d61
wip: update report try auc example; crash
mnneely Mar 13, 2026
c42ad0c
wip: update example
mnneely Mar 13, 2026
29962ac
feat: function to download latest version of R
mnneely Mar 14, 2026
e281237
wip: BD report updates
mnneely Mar 16, 2026
f74767c
fix: update pkgdown
mnneely Apr 9, 2026
8f2a0a1
wip: merge bestdose branch
mnneely Apr 9, 2026
fda0bc3
wip: merge main into branch
mnneely Apr 9, 2026
8db699c
usng latest version of PMcore, it works but I neet to validate it a b…
Siel Apr 9, 2026
ab614d5
fix: fix to match the expected structures in PMcore
Siel Apr 17, 2026
fca0076
wip: ignore inst/Examples
mnneely Apr 21, 2026
8afc664
wip: update documentation
mnneely Apr 21, 2026
7148a3c
fix: unresolved <<< HEAD
mnneely Aug 13, 2026
b36c427
fix: restore main-compatible Rust runtime
mnneely Aug 13, 2026
f999822
fix: resolve remaining merge artifacts
mnneely Aug 13, 2026
905c0ba
fix: merge remaining merge artifacts
mnneely Aug 13, 2026
03a46f8
fix: pkgdown errors
mnneely Aug 13, 2026
720b530
fix: update example data
mnneely Aug 13, 2026
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1 change: 1 addition & 0 deletions .Rbuildignore
Original file line number Diff line number Diff line change
Expand Up @@ -21,3 +21,4 @@
^dev$
^\.posit$
^temp$
^vignettes/\.quarto$
11 changes: 10 additions & 1 deletion .gitignore
Original file line number Diff line number Diff line change
Expand Up @@ -49,7 +49,15 @@ inst/rust/template/*
# Example runs
data-raw/Runs/
inst/Examples/

tests/testthat/Runs/
Examples
inst/Examples/
Experimental
other/
1
2
3
errors.xlsx

# Misc project outputs
*_test.R
Expand All @@ -62,3 +70,4 @@ src/rust/vendor

# Old files
Archived

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