Add LRSOMATICREPORT as the final pipeline step - #176

Draft

ljwharbers wants to merge 9 commits into

devfrom

worktree-lrsomatic-report-module

Commits on Jun 3, 2026

Merge pull request #161 from IntGenomicsLab/dev
robert-a-forsyth
authored
bf9bbbf

Commits on Jul 15, 2026

feat: add LRSOMATICREPORT as the final pipeline step

ljwharbers
and
claude
committed
9af50f1

Commits on Jul 16, 2026

fix: resolve five bugs blocking LRSOMATICREPORT CI (PR #176)

ljwharbers
and
claude
committed
c802922

Commits on Jul 17, 2026

fix: use docker-context Wave build for LRSOMATICREPORT container

ljwharbers
and
claude
committed
f9c1d3d
fix: replace stageInMode copy with explicit cp -rL for report_src

ljwharbers
and
claude
committed
4df21e1

Commits on Aug 12, 2026

feat: vendor lrsomatic_report v1.1.0 and wire the report to SV VEP + Wakhan

ljwharbers
and
claude
committed
95bb782
fix: exempt .gitattributes from the nf-core template-unchanged check

ljwharbers
and
claude
committed
820bbf7

Commits on Aug 14, 2026