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Pull requests: ComparativeGenomicsToolkit/cactus

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Pull requests list

Have clip-vg trim flanks of big unaligned sequences
#1990 opened Aug 31, 2026 by glennhickey Collaborator Loading…
fix_vcf_ploidies: bgzip must stay a filter, not take a filename
#1989 opened Aug 31, 2026 by glennhickey Collaborator Loading…
hold --mgSplit second-pass MAPQ to the whole-genome value
#1988 opened Aug 31, 2026 by glennhickey Collaborator Loading…
Make cactus reproducible
#1985 opened Aug 25, 2026 by glennhickey Collaborator Loading…
WIP: api tuning
#1961 opened Jul 25, 2026 by glennhickey Collaborator Loading…
WIP: Toil times
#1958 opened Jul 23, 2026 by glennhickey Collaborator Loading…
add taffy viz toil script (cactus-mafviz)
#1571 opened Dec 20, 2024 by glennhickey Collaborator Loading…
try to orient bar jobs on reference to left-align downstream
#1248 opened Dec 12, 2023 by glennhickey Collaborator Loading…
rGFA support (experimental)
#1186 opened Oct 3, 2023 by glennhickey Collaborator Loading…
WIP: Pangenome Outgroups
#1043 opened Jun 8, 2023 by glennhickey Collaborator Loading…
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