Dimensionality reduction and batch integration methods for single cell data
corral is a package to perform correspondence analysis on count data, particularly for single-cell (e.g., RNA-seq).
It can be used on a single table for dimensionality reduction, or it can be used for integration across batches, samples, and modes.
To install the dev version: devtools::install_github('laurenhsu1/corral')
Or it can be installed with BiocManager::install("laurenhsu1/corral", dependencies = TRUE)
The package contains two main function calls:
corralfor dimensionality reduction on a single tablecorralmfor alignment and batch integration of multiple tables
See the vignettes for details on outputs and how to plot.