R package containing the functions required to run AquaNet-Mod (The Aquaculture Disease Network Model).
Scripts for AquaNet-Mod located at https://github.com/CefasRepRes/aquanet-mod.
If using this package, please cite the package, scripts and accompanying paper.
To cite the package:
Armitage, S., Harper, J., Millard, R., Alewijnse, S., Ryder, D. and Guilder, J. Functions to Execute AquaNet-Mod (The Aquaculture Disease Network Model) github.com/CefasRepRes/aquanet
To cite the scripts:
Armitage, S., Harper, J., Alewijnse, S., Millard, R., Ryder, D. and Guilder, J. R scripts for AquaNet-Mod (The Aquaculture Disease Network Model) github.com/CefasRepRes/aquanet-mod
To cite the paper:
Guilder, J., Ryder, D., Taylor, N. G. H., Alewijnse, S. R., Millard, R. S., Thrush, M. A., Peeler, E. J. & Tidbury, H. J. The aquaculture disease network model (AquaNet-Mod): a simulation model to evaluate disease spread and controls for the salmonid industry in England and Wales. In press.
Use remotes package to install from GitHub (ensure installed from CRAN if not already).
library(remotes)
remotes::install_github("CefasRepRes/aquanet")
library(aquanet)