FEDI Toolbox

Fetal and Neonatal Development Imaging (FEDI) toolbox is a comprehensive, free, open-source toolbox that provides a suite of command-line tools dedicated to the processing and analysis of fetal and neonatal MRI data.

Key Features

• Outlier deteciton for dMRI
• Motion Correction for dMRI
• Complete pipeline for fetal dMRI
• Many other features coming soon

Installation

To install the FEDI toolbox, clone the repository and add the necessary paths to your .bashrc file:

git https://github.com/FEDIToolbox/FEDI.git
cd FEDI

Dependencies

Recommended to use Anaconda Python distribution.

• DIPY
• CVXPY
• MRtrix3
• FSL
• ANTs.
• Numpy, Scipy, Nibabel, Matplotlib

Contact

For questions, issues, or suggestions, please open an issue on GitHub.