Hi, I have anaconda and I am trying to use htseq. this is the code
eval "$(conda shell.bash hook)"
conda activate anaconda3
htseq-count format bam w_NF18553nod_sorted.bam medtr.R108_HM340.gnm1.ann1.85YW.gcv_genes.gff3 -o htseqresults.txt
and I get this error
Traceback (most recent call last):
File "/truba/home/ikryvoruchko/anaconda3/bin/htseq-count", line 3, in
import HTSeq.scripts.count
File "/truba/home/ikryvoruchko/anaconda3/lib/python3.8/site-packages/HTSeq/init.py", line 13, in
from HTSeq._HTSeq import *
File "src/HTSeq/_HTSeq.pyx", line 1, in init HTSeq._HTSeq
ValueError: numpy.ndarray size changed, may indicate binary incompatibility. Expected 96 from C header, got 80 from PyObject
do you have any idea why could this be? thank you
selma
Hi, I have anaconda and I am trying to use htseq. this is the code
eval "$(conda shell.bash hook)"
conda activate anaconda3
htseq-count format bam w_NF18553nod_sorted.bam medtr.R108_HM340.gnm1.ann1.85YW.gcv_genes.gff3 -o htseqresults.txt
and I get this error
Traceback (most recent call last):
File "/truba/home/ikryvoruchko/anaconda3/bin/htseq-count", line 3, in
import HTSeq.scripts.count
File "/truba/home/ikryvoruchko/anaconda3/lib/python3.8/site-packages/HTSeq/init.py", line 13, in
from HTSeq._HTSeq import *
File "src/HTSeq/_HTSeq.pyx", line 1, in init HTSeq._HTSeq
ValueError: numpy.ndarray size changed, may indicate binary incompatibility. Expected 96 from C header, got 80 from PyObject
do you have any idea why could this be? thank you
selma