I am confused about what version of spp I have installed through bioconda.
The bioconda release page lists versions through 1.16. When I install the latest, I get the following in the sessionInfo();
> sessionInfo()
R version 4.3.1 (2023-06-16)
Platform: x86_64-conda-linux-gnu (64-bit)
Running under: Ubuntu 20.04.6 LTS
Matrix products: default
BLAS/LAPACK: /home/oguzkhan/miniconda3/lib/libopenblasp-r0.3.25.so; LAPACK version 3.11.0
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
time zone: America/Chicago
tzcode source: system (glibc)
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] spp_1.16.0 Rcpp_1.0.11
loaded via a namespace (and not attached):
[1] compiler_4.3.1 tools_4.3.1 parallel_4.3.1 caTools_1.18.2 bitops_1.0-7
But when I look at ?spp, I get this:
...
Details:
Package: spp
Type: Package
Version: 1.11
Date: 2012-06-20
License: What license is it under?
LazyLoad: yes
See example below for typical processing sequence.y
...
The github repo doesn't have any releases past 1.15.2, and CRAN seems to think that spp was removed from the repo:
Package ‘spp’ was removed from the CRAN repository.
Formerly available versions can be obtained from the archive.
Archived on 2022-11-20 as issues were not corrected despite reminders.
A summary of the most recent check results can be obtained from the check results archive.
Please use the canonical form https://cran.r-project.org/package=spp to link to this page.
the archive does list version 1.16, with warnings on a build on some OS, which implies that there is a version 1.16 repo somewhere -- possibly this isn't the repository of record anymore?
I am confused about what version of
sppI have installed through bioconda.The bioconda release page lists versions through 1.16. When I install the latest, I get the following in the
sessionInfo();But when I look at
?spp, I get this:The github repo doesn't have any releases past
1.15.2, and CRAN seems to think thatsppwas removed from the repo:the archive does list version 1.16, with warnings on a build on some OS, which implies that there is a version 1.16 repo somewhere -- possibly this isn't the repository of record anymore?