From e2ae8d159378a700872c45f66805376531e04fa7 Mon Sep 17 00:00:00 2001 From: "Mitchell R. Vollger" Date: Thu, 13 Aug 2026 18:05:49 -0700 Subject: [PATCH 1/2] Advise installing FIRE from the latest tagged release FIRE releases are now automated (release-please), so tags are the supported install points rather than whatever is on main. Co-Authored-By: Claude Fable 5 --- src/fire/run.md | 11 ++++++++++- 1 file changed, 10 insertions(+), 1 deletion(-) diff --git a/src/fire/run.md b/src/fire/run.md index 94d5a64..293244a 100644 --- a/src/fire/run.md +++ b/src/fire/run.md @@ -14,11 +14,20 @@ The FIRE pipeline is a Snakemake workflow for calling Fiber-seq Inferred Regulat Please start by installing [pixi](https://pixi.sh/latest/) which handles the environment of the FIRE workflow. -Then install FIRE using `git` and `pixi`: +Then install the latest [tagged release](https://github.com/fiberseq/FIRE/releases) of FIRE using `git` and `pixi`: ```bash git clone https://github.com/fiberseq/FIRE.git cd FIRE +git checkout $(git describe --tags --abbrev=0) +pixi install +``` + +To update an existing installation to the latest release: + +```bash +git fetch --tags +git checkout $(git describe --tags --abbrev=0 origin/main) pixi install ``` From 9caac90e2b35397eafcd5e2bd17c1c15919aff4c Mon Sep 17 00:00:00 2001 From: "Mitchell R. Vollger" Date: Thu, 13 Aug 2026 18:06:39 -0700 Subject: [PATCH 2/2] Use the releases/latest redirect one-liner for FIRE installs Co-Authored-By: Claude Fable 5 --- src/fire/run.md | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/src/fire/run.md b/src/fire/run.md index 293244a..1947c0d 100644 --- a/src/fire/run.md +++ b/src/fire/run.md @@ -17,9 +17,8 @@ Please start by installing [pixi](https://pixi.sh/latest/) which handles the env Then install the latest [tagged release](https://github.com/fiberseq/FIRE/releases) of FIRE using `git` and `pixi`: ```bash -git clone https://github.com/fiberseq/FIRE.git +git clone -b $(basename $(curl -fsSLo /dev/null -w '%{url_effective}' https://github.com/fiberseq/FIRE/releases/latest)) https://github.com/fiberseq/FIRE.git cd FIRE -git checkout $(git describe --tags --abbrev=0) pixi install ```