diff --git a/src/fire/run.md b/src/fire/run.md index 94d5a64..1947c0d 100644 --- a/src/fire/run.md +++ b/src/fire/run.md @@ -14,14 +14,22 @@ The FIRE pipeline is a Snakemake workflow for calling Fiber-seq Inferred Regulat Please start by installing [pixi](https://pixi.sh/latest/) which handles the environment of the FIRE workflow. -Then install FIRE using `git` and `pixi`: +Then install the latest [tagged release](https://github.com/fiberseq/FIRE/releases) of FIRE using `git` and `pixi`: ```bash -git clone https://github.com/fiberseq/FIRE.git +git clone -b $(basename $(curl -fsSLo /dev/null -w '%{url_effective}' https://github.com/fiberseq/FIRE/releases/latest)) https://github.com/fiberseq/FIRE.git cd FIRE pixi install ``` +To update an existing installation to the latest release: + +```bash +git fetch --tags +git checkout $(git describe --tags --abbrev=0 origin/main) +pixi install +``` + We then recommend quickly testing your installation by running the test suite: ```bash