From f3a018480f539db6cd98f28fe5b3c46d10f4d418 Mon Sep 17 00:00:00 2001 From: Bradley Bowles <52672462+bbowles1@users.noreply.github.com> Date: Tue, 17 Oct 2023 22:05:12 -0700 Subject: [PATCH] Update README.md --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index acaa2b2..a0e3146 100644 --- a/README.md +++ b/README.md @@ -24,7 +24,7 @@ Running all ORFA scripts requires several input files: # Building the Catalog Users will need to run a first-time setup to generate several additional reference files. 1. To begin this work, the user will need to download the above files and provide their absolute paths in the "config.txt" file. -2. After updating config.txt, the user will need to run "bin/Catalog_Setup_Config.py." This script will create the following files: +2. After updating config.txt, the user will need to run `bin/Catalog_Setup_Config.py`. This will create the following files: - uorf_catalog.tsv: Contains a filtered set of McGillivray et al. annotations and their start locations within the gneome. - uorf_catalog.bed: A .bed file for the same regions as above. - Range_df.pkl: A data structure mapping Ensembl 5'UTR exon regions to their associated FASTA sequence.