diff --git a/README.html b/README.html deleted file mode 100644 index 6799300..0000000 --- a/README.html +++ /dev/null @@ -1,32 +0,0 @@ -
-This is the sourse code for the model used in the following paper: - -Maran SK, Sieling FH, Demla K, Prinz AA, Canavier CC. "Responses of a -bursting pacemaker to excitation reveal spatial segregation between -bursting and spiking mechanisms". J Comput Neurosci. 2011 Mar 1. -[Epub ahead of print] -PubMed PMID: 21360137; PubMed Central PMCID: PMC3160527. - -There are three files - ABPDdriver.c, ABPDcon.h and ABPD.h. - ABPDcon.h has the values for different parameters such as - conductance strength, reversal potentials etc - ABPD.h has the code for kinetic equations and current - equations of different channels. Also the code for numerical - method. - ABPDdriver.c has the main function. - -To run simulation compile the ABPDdriver file - for example - -gcc -lm ABPDdriver.c - -to get executable file and run the executable file with "./a.out". -The simulation will create the file tm_volts.xls that contains the -time in first column and somatic voltage values in the second -column. The units are x-axis in milliseconds and y-axis in millivolts. -The output is the somatic voltage trace of the model during -spontaneous bursting: - -diff --git a/README.md b/README.md new file mode 100644 index 0000000..df02768 --- /dev/null +++ b/README.md @@ -0,0 +1,36 @@ +This is the source code for the model used in the following paper: + +Maran SK, Sieling FH, Demla K, Prinz AA, Canavier CC. "Responses of a +bursting pacemaker to excitation reveal spatial segregation between +bursting and spiking mechanisms". *J Comput Neurosci*. 2011 Mar 1. +[Epub ahead of print] +PubMed PMID: 21360137; PubMed Central PMCID: PMC3160527. + +There are three files - ABPDdriver.c, ABPDcon.h and ABPD.h. +- **ABPDcon.h** has the values for different parameters such as + conductance strength, reversal potentials etc +- **ABPD.h** has the code for kinetic equations and current + equations of different channels. Also the code for numerical + method. +- **ABPDdriver.c** has the main function. + +To run simulation compile the ABPDdriver file - for example + +``` +gcc -lm ABPDdriver.c +``` + +to get executable file and run the executable file with `./a.out`. +The simulation will create the file `tm_volts.xls` that contains the +time in first column and somatic voltage values in the second +column. The units are x-axis in milliseconds and y-axis in millivolts. +The output is the somatic voltage trace of the model during +spontaneous bursting: + + + +If you have any questions/comments please contact selvamaran@gmail.com. + +--- + +2025-06-20: Converted README to Markdown. \ No newline at end of file- -If you have any questions/comments please contact selvamaran@gmail.com. -