diff --git a/README.html b/README.html deleted file mode 100644 index 6799300..0000000 --- a/README.html +++ /dev/null @@ -1,32 +0,0 @@ -
-This is the sourse code for the model used in the following paper:
-
-Maran SK, Sieling FH, Demla K, Prinz AA, Canavier CC. "Responses of a
-bursting pacemaker to excitation reveal spatial segregation between
-bursting and spiking mechanisms". J Comput Neurosci. 2011 Mar 1.
-[Epub ahead of print]
-PubMed PMID: 21360137; PubMed Central PMCID: PMC3160527.
-
-There are three files - ABPDdriver.c, ABPDcon.h and ABPD.h.
-	ABPDcon.h has the values for different parameters such as
-	conductance strength, reversal potentials etc
-	ABPD.h has the code for kinetic equations and current
-	equations of different channels. Also the code for numerical
-	method.
-	ABPDdriver.c has the main function.
-
-To run simulation compile the ABPDdriver file - for example 
-
-gcc -lm ABPDdriver.c
-
-to get executable file and run the executable file with "./a.out".
-The simulation will create the file tm_volts.xls that contains the
-time in first column and somatic voltage values in the second
-column. The units are x-axis in milliseconds and y-axis in millivolts.
-The output is the somatic voltage trace of the model during
-spontaneous bursting:
-
-screenshot
-
-If you have any questions/comments please contact selvamaran@gmail.com.
-
diff --git a/README.md b/README.md new file mode 100644 index 0000000..df02768 --- /dev/null +++ b/README.md @@ -0,0 +1,36 @@ +This is the source code for the model used in the following paper: + +Maran SK, Sieling FH, Demla K, Prinz AA, Canavier CC. "Responses of a +bursting pacemaker to excitation reveal spatial segregation between +bursting and spiking mechanisms". *J Comput Neurosci*. 2011 Mar 1. +[Epub ahead of print] +PubMed PMID: 21360137; PubMed Central PMCID: PMC3160527. + +There are three files - ABPDdriver.c, ABPDcon.h and ABPD.h. +- **ABPDcon.h** has the values for different parameters such as + conductance strength, reversal potentials etc +- **ABPD.h** has the code for kinetic equations and current + equations of different channels. Also the code for numerical + method. +- **ABPDdriver.c** has the main function. + +To run simulation compile the ABPDdriver file - for example + +``` +gcc -lm ABPDdriver.c +``` + +to get executable file and run the executable file with `./a.out`. +The simulation will create the file `tm_volts.xls` that contains the +time in first column and somatic voltage values in the second +column. The units are x-axis in milliseconds and y-axis in millivolts. +The output is the somatic voltage trace of the model during +spontaneous bursting: + +![screenshot](./screenshot.jpg) + +If you have any questions/comments please contact selvamaran@gmail.com. + +--- + +2025-06-20: Converted README to Markdown. \ No newline at end of file